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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00981
         (408 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZUP0|LBD8_ARATH  Putative LOB domain protein 8                28   5.5  
sp|Q89AT4|NUON_BUCBP  NADH-quinone oxidoreductase chain N (N...    28   5.5  

>sp|Q9ZUP0|LBD8_ARATH Putative LOB domain protein 8
          Length = 120

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 12  CEPYNAYIPYELLDYYEPQNSFFTTRSGMECRRY 113
           CE Y  Y PYEL  +YE  N  F T   ++  R+
Sbjct: 24  CE-YAEYFPYELRSHYESTNELFGTPKIIKMMRH 56

>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
           (NDH-1, chain N)
          Length = 494

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 366 IFRNLIFNITKLKVFFILDVLLS--LDQEFLLYCSFDEIYLEPFHQ*FLLLLLCKV 205
           I    +F+I K  + +I  V++S  L   F  YCS    YL  F + +LLLL C +
Sbjct: 61  IHATTLFHIDKYSLLYIGIVIISSFLACIFSHYCSLTN-YLYNFEEFYLLLLFCTI 115

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,506,593
Number of Sequences: 369166
Number of extensions: 827984
Number of successful extensions: 2216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_024_L20
2. Dr_sW_006_O21
3. Dr_sW_017_H04