Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H04
(394 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24896|NU5M_CAEEL NADH-ubiquinone oxidoreductase chain 5... 29 3.0
sp|Q9ZUP0|LBD8_ARATH Putative LOB domain protein 8 28 8.6
sp|Q57868|Y425_METJA Hypothetical protein MJ0425 28 8.6
>sp|P24896|NU5M_CAEEL NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 527
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 382 NILFHSYYNMIFRNLIFNITKLKVFLFWTFYFHSIKNFFY 263
++ F+ Y+N I + I + V +F T+Y +S NF Y
Sbjct: 38 SLKFNFYFNSILFSFILFLVTFSVLVFSTYYLNSELNFNY 77
>sp|Q9ZUP0|LBD8_ARATH Putative LOB domain protein 8
Length = 120
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 8 YNAYIPYELLDYYEPQNSFFTTRSGMECRRY 100
Y Y PYEL +YE N F T ++ R+
Sbjct: 26 YAEYFPYELRSHYESTNELFGTPKIIKMMRH 56
>sp|Q57868|Y425_METJA Hypothetical protein MJ0425
Length = 140
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 385 NNIL--FHSYYNMIFRNLIFNITKLKVFLF 302
N IL + YY +F NL+F + KLK+ F
Sbjct: 22 NKILASLNEYYGKMFENLVFEMLKLKIIDF 51
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,197,345
Number of Sequences: 369166
Number of extensions: 835530
Number of successful extensions: 2349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2348
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)