Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_O21
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23191|T2M2_MORBO Type IIS restriction enzyme MboII (End... 29 3.9
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 28 5.1
sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homo... 28 8.6
>sp|P23191|T2M2_MORBO Type IIS restriction enzyme MboII (Endonuclease MboII) (R.MboII)
Length = 416
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 361 NMISRNLIFN--ITKLKVFFILDVLLSLDQEFLLYCSFDEIYL 239
+++S+NLIF+ + KL F+ DVL L L SFDE L
Sbjct: 149 DILSKNLIFSKSLNKLLTGFVEDVLSLLTNSDLKEISFDEFML 191
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 355 ISRNLIFNITKLKVFFILDVLLS--LDQEFLLYCSFDEIYLEPFHQ*FLLLLLCKV 194
I +F+I K + +I V++S L F YCS YL F + +LLLL C +
Sbjct: 61 IHATTLFHIDKYSLLYIGIVIISSFLACIFSHYCSLTN-YLYNFEEFYLLLLFCTI 115
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog (Gamma ring complex
protein 84) (dGrip84) (d84p)
Length = 852
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 391 LNNILFHSYYNMISRNLIFNITKLKVFFILDVLLSLDQEFLLYCSFDEIYLEPFHQ*FLL 212
+ N+ ++ +I N I K+K +D +L L Q+FL C + + E H +
Sbjct: 673 IQNLEYYMMIEIIEPNWHIFIEKMKTVENVDNVLRLHQDFLDSCLKNCMLTESSHLNRSI 732
Query: 211 LLLCKV 194
LCK+
Sbjct: 733 FKLCKI 738
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,484,761
Number of Sequences: 369166
Number of extensions: 818682
Number of successful extensions: 2258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2258
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)