Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L20
(362 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZUP0|LBD8_ARATH Putative LOB domain protein 8 28 5.1
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 28 6.6
>sp|Q9ZUP0|LBD8_ARATH Putative LOB domain protein 8
Length = 120
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 12 CEPYNAYIPYELLDYYEPQNSFFTTRSGMECRRY 113
CE Y Y PYEL +YE N F T ++ R+
Sbjct: 24 CE-YAEYFPYELRSHYESTNELFGTPKIIKMMRH 56
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 351 IFNITKLKVFFILDVLLS--LDQEFLLYCSFDEIYLEPFHQ*FLLLLLCKV 205
+F+I K + +I V++S L F YCS YL F + +LLLL C +
Sbjct: 66 LFHIDKYSLLYIGIVIISSFLACIFSHYCSLTN-YLYNFEEFYLLLLFCTI 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,469,576
Number of Sequences: 369166
Number of extensions: 765191
Number of successful extensions: 2029
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2029
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)