Planaria EST Database

DrC_00975

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00975
         (911 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P61980|HNRPK_RAT  Heterogeneous nuclear ribonucleoprotein...    81   5e-15
sp|O19049|HNRPK_RABIT  Heterogeneous nuclear ribonucleoprote...    80   8e-15
sp|P57722|PCBP3_MOUSE  Poly(rC)-binding protein 3 (Alpha-CP3)      70   1e-11
sp|P57721|PCBP3_HUMAN  Poly(rC)-binding protein 3 (Alpha-CP3)      70   1e-11
sp|P57723|PCBP4_HUMAN  Poly(rC)-binding protein 4 (Alpha-CP4)      61   4e-09
sp|Q61990|PCBP2_MOUSE  Poly(rC)-binding protein 2 (Alpha-CP2...    58   4e-08
sp|Q15366|PCBP2_HUMAN  Poly(rC)-binding protein 2 (Alpha-CP2...    57   7e-08
sp|Q96I24|FUBP3_HUMAN  Far upstream element-binding protein ...    52   2e-06
sp|Q92945|FUBP2_HUMAN  Far upstream element-binding protein ...    50   9e-06
sp|P60335|PCBP1_MOUSE  Poly(rC)-binding protein 1 (Alpha-CP1...    48   3e-05

>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K (dC stretch-binding
           protein) (CSBP)
 sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K
 sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (Transformation
           up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 80.9 bits (198), Expect = 5e-15
 Identities = 40/105 (38%), Positives = 69/105 (65%)
 Frame = +1

Query: 55  YIESENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMV 234
           Y  S+ + +LR+++H+S AG +IG  G +I+ L ++   T IKL++  CP+STDRVV + 
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENT-QTTIKLFQECCPHSTDRVVLIG 196

Query: 235 SKMENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGF 369
            K + ++ C++ + +L+    IKG  + Y+P+ YDE+   +YGGF
Sbjct: 197 GKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETY--DYGGF 239


 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 25/74 (33%), Positives = 45/74 (60%)
 Frame = +1

Query: 640 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQC 819
           ++VT+P++L  +I+GK G+R+  +  E GA+I++D       + I  I G+ DQI  AQ 
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQY 449

Query: 820 LMQLCARKFADDGF 861
           L+Q   ++++   F
Sbjct: 450 LLQNSVKQYSGKFF 463


 Score = 35.0 bits (79), Expect = 0.29
 Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
 Frame = +1

Query: 19  AKECDYKGSSSKYIESENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTF 198
           A++ + + +  +   ++  ++LR+++    AGAVIGKGG+ I+ L   +  ++       
Sbjct: 24  AEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------S 77

Query: 199 CPNST--DRVVRMVSKMENLMACLENVFELLE 288
            P+S+  +R++ + + +E +   L+ +   LE
Sbjct: 78  VPDSSGPERILSISADIETIGEILKKIIPTLE 109


 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/72 (27%), Positives = 39/72 (54%)
 Frame = +1

Query: 76  IDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLM 255
           I  ++ + +  AG++IGKGG+RI+ +    G + IK+ +     S DR++ +    +   
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS-IKIDEPL-EGSEDRIITITGTQDQ-- 443

Query: 256 ACLENVFELLEN 291
             ++N   LL+N
Sbjct: 444 --IQNAQYLLQN 453

>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K)
          Length = 463

 Score = 80.1 bits (196), Expect = 8e-15
 Identities = 39/102 (38%), Positives = 68/102 (66%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S+ + +LR+++H+S AG +IG  G +I+ L ++   T IKL++  CP+STDRVV +  K 
Sbjct: 141 SDFDCELRLLIHQSLAGGIIGVKGAKIKELRENT-QTTIKLFQECCPHSTDRVVLIGGKP 199

Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGF 369
           + ++ C++ + +L+    IKG  + Y+P+ YDE+   +YGGF
Sbjct: 200 DRVVECIKIILDLISESPIKGRAQPYDPNFYDETY--DYGGF 239


 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 25/74 (33%), Positives = 45/74 (60%)
 Frame = +1

Query: 640 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQC 819
           ++VT+P++L  +I+GK G+R+  +  E GA+I++D       + I  I G+ DQI  AQ 
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQY 449

Query: 820 LMQLCARKFADDGF 861
           L+Q   ++++   F
Sbjct: 450 LLQNSVKQYSGKFF 463


 Score = 35.4 bits (80), Expect = 0.22
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
 Frame = +1

Query: 19  AKECDYKGSSSKYIESENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTF 198
           A++ + + +  +   ++  ++LR+++    AGAVIGKGG+ I+ L   +  ++       
Sbjct: 24  AEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------S 77

Query: 199 CPNST--DRVVRMVSKMENLMACLENVFELLEN--QAIKGTRKDYNPDNYDESLAPNYGG 366
            P+S+  +R++ + + +E +   L+ +   LE   Q    T     P   D     NY  
Sbjct: 78  VPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137

Query: 367 FISKD 381
           F   D
Sbjct: 138 FKGSD 142


 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/72 (27%), Positives = 39/72 (54%)
 Frame = +1

Query: 76  IDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLM 255
           I  ++ + +  AG++IGKGG+RI+ +    G + IK+ +     S DR++ +    +   
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS-IKIDEPL-EGSEDRIITITGTQDQ-- 443

Query: 256 ACLENVFELLEN 291
             ++N   LL+N
Sbjct: 444 --IQNAQYLLQN 453

>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
          Length = 339

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S+  + LR+VV  SQ G++IGKGG +I+ + +S G   +++     PNST+R V +    
Sbjct: 94  SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTP 152

Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQS 423
           + ++ C++ +  ++     KG    Y P      +    G   +          I    +
Sbjct: 153 DAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT----------IQGQYA 202

Query: 424 VGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIR 603
           + H   L K         PF                P   Q NP    G    L      
Sbjct: 203 IPHPDQLTKLHQLAMQQTPF----------------PPLGQTNPAFP-GEKLPLHSSEEA 245

Query: 604 MNSINDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG 765
            N +   + ++ S       +T+P +L+  I+G+ G ++N++ +  GA I++        
Sbjct: 246 QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 305

Query: 766 ESIFIIRGSPDQIYKAQCLM 825
           E    I G+P  I  AQ L+
Sbjct: 306 ERQITITGTPANISLAQYLI 325

>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
          Length = 339

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S+  + LR+VV  SQ G++IGKGG +I+ + +S G   +++     PNST+R V +    
Sbjct: 94  SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTP 152

Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQS 423
           + ++ C++ +  ++     KG    Y P      +    G   +          I    +
Sbjct: 153 DAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT----------IQGQYA 202

Query: 424 VGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIR 603
           + H   L K         PF                P   Q NP    G    L      
Sbjct: 203 IPHPDQLTKLHQLAMQQTPF----------------PPLGQTNPAFP-GEKLPLHSSEEA 245

Query: 604 MNSINDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG 765
            N +   + ++ S       +T+P +L+  I+G+ G ++N++ +  GA I++        
Sbjct: 246 QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 305

Query: 766 ESIFIIRGSPDQIYKAQCLM 825
           E    I G+P  I  AQ L+
Sbjct: 306 ERQITITGTPANISLAQYLI 325

>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
          Length = 403

 Score = 61.2 bits (147), Expect = 4e-09
 Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 2/259 (0%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S   + LR+V+  SQ G++IGK G +I+ + ++ G   +++     PNST+R V +    
Sbjct: 98  SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTG-AQVQVAGDLLPNSTERAVTVSGVP 156

Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPD-NYDESLAPNYGGFISKDSRHPPRRGINNNQ 420
           + ++ C+  +  ++     KG    Y+P  +    L     GF            +    
Sbjct: 157 DAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGF-----------SVQGQY 205

Query: 421 SVGHISDLYKSDDYMPHPNPFSR-SIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGS 597
                +++ K      H  PF+  S+  G D G                           
Sbjct: 206 GAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPG--------------------------- 238

Query: 598 IRMNSINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIF 777
                       +     VP +L+  ++G+ G +++++ +  GA+I++       GE   
Sbjct: 239 ---------TQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289

Query: 778 IIRGSPDQIYKAQCLMQLC 834
            I GSP  I  AQ L+  C
Sbjct: 290 TITGSPVSIALAQYLITAC 308


 Score = 30.8 bits (68), Expect = 5.5
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 58  IESENEID----LRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCP 204
           +E E E+     LRM++H  + G++IGK GE ++  I       I + +  CP
Sbjct: 8   LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKR-IREQSSARITISEGSCP 59

>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous
           nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP)
          Length = 362

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 11/267 (4%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S   + LR+VV  SQ G++IGKGG +I+ + +S G   +++     PNST+R + +    
Sbjct: 94  SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGIP 152

Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYG------GFISKDSRHPPRRG 405
           ++++ C++ +  ++     KG    Y P      +    G      G  S    H     
Sbjct: 153 QSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSM 212

Query: 406 INNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLE-RGGVTD 582
             N    G   + Y        P P            +H +  M     PM     G + 
Sbjct: 213 CLNPDLEGPPLEAYTIQGQYAIPQPDLTK--------LHQL-AMQQSHFPMTHGNTGFSG 263

Query: 583 LFGGSIRMNSI---NDVNSMNMS-RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDID 750
           +   S  +       D ++   S  +T+P +L+  I+G+ G ++N++ +  GA I++   
Sbjct: 264 IESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP 323

Query: 751 RMNMGESIFIIRGSPDQIYKAQCLMQL 831
                +    I GS   I  AQ L+ +
Sbjct: 324 VEGSTDRQVTITGSAASISLAQYLINV 350

>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)
          Length = 365

 Score = 57.0 bits (136), Expect = 7e-08
 Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 16/272 (5%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S   + LR+VV  SQ G++IGKGG +I+ + +S G   +++     PNST+R + +    
Sbjct: 94  SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGIP 152

Query: 244 ENLMACLENV----FELLENQAIKGTRKDYNPDNYDESLAPNYG------GFISKDSRHP 393
           ++++ C++ +     E L     KG    Y P      +    G      G  S    H 
Sbjct: 153 QSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHT 212

Query: 394 PRRGINNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGG 573
                 N    G   + Y        P P            +H +  M     PM    G
Sbjct: 213 TPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK--------LHQL-AMQQSHFPMTH--G 261

Query: 574 VTDLFGGSIRMNSINDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANI 735
            T   G       +     ++ S       +T+P +L+  I+G+ G ++N++ +  GA I
Sbjct: 262 NTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 321

Query: 736 EMDIDRMNMGESIFIIRGSPDQIYKAQCLMQL 831
           ++        +    I GS   I  AQ L+ +
Sbjct: 322 KIANPVEGSTDRQVTITGSAASISLAQYLINV 353

>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
          Length = 572

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 16/268 (5%)
 Frame = +1

Query: 70  NEIDLRMVVHE-----SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMV 234
           N+ID    + E     S+ G VIG+GGE I+ L +  G+ M+ +     P   D+ +R+ 
Sbjct: 156 NDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215

Query: 235 SKMENLMACLENVFELL--ENQA-IKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRG 405
                +    E V E++  ++QA  +G R D+N      S+  +   F            
Sbjct: 216 GDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEM 275

Query: 406 INNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDL 585
           I   Q+   +   +K DD +      +  +    D   H    ++       ER G   L
Sbjct: 276 IKKIQNDAGVRIQFKPDDGISPER--AAQVMGPPDRCQHAAHIISELILTAQERDGFGGL 333

Query: 586 FGGSIRMN-----SINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDID 750
                R       S+     +     TVP +    ++GK G  +  + ++ GA++E+  +
Sbjct: 334 AAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393

Query: 751 ---RMNMGESIFIIRGSPDQIYKAQCLM 825
                +     F IRG P QI  A+ L+
Sbjct: 394 PPPNSDPNLRRFTIRGVPQQIEVARQLI 421


 Score = 37.7 bits (86), Expect = 0.045
 Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
 Frame = +1

Query: 502 GYDDGMHNVR---------PMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMSRVT- 651
           G+ D +H VR         P  N   P+++      ++G  ++   ++D     +  +  
Sbjct: 18  GFVDALHRVRQIAAKIDSIPHLNNSTPLVD----PSVYGYGVQKRPLDDGVGNQLGALVH 73

Query: 652 ----------VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQ 801
                     VP  +V  I+G+ G +++ ++ E G  I++  +   + E   ++ G+P+ 
Sbjct: 74  QRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES 133

Query: 802 IYKAQCLM 825
           I +A+ L+
Sbjct: 134 IEQAKRLL 141


 Score = 32.0 bits (71), Expect = 2.5
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 646 VTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI-YKAQCL 822
           V+VP+  V  ++G++G  +  ++ + G  I+   D     E    + G PD+  + A  +
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHII 317

Query: 823 MQLCARKFADDGF 861
            +L       DGF
Sbjct: 318 SELILTAQERDGF 330

>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
           type splicing regulatory protein) (KSRP) (p75)
          Length = 707

 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 59/260 (22%), Positives = 104/260 (40%), Gaps = 13/260 (5%)
 Frame = +1

Query: 88  MVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLE 267
           +++   +AG VIGKGGE I+ L +  G+ MI +       + D+ +R++     +    E
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 297

Query: 268 NVFELLEN--QAIKGTRKDYNP---DNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGH 432
            V ++L N  +A  G R +Y        D  +  +  G +   S       I   Q+   
Sbjct: 298 MVMDILRNVTKAGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEM----IKKIQNDAG 353

Query: 433 ISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERG-----GVTDLFGGS 597
           +   +K DD      P   +   G  D   +   + N     L  G     G   + GG 
Sbjct: 354 VRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGIPGGR 410

Query: 598 IRMNSINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG---E 768
            R     +         ++P +    ++G+ G  +  + ++ GA +E+       G    
Sbjct: 411 GRGRGQGNWGPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTS 470

Query: 769 SIFIIRGSPDQIYKAQCLMQ 828
            +FIIRGSP QI   + L++
Sbjct: 471 KLFIIRGSPQQIDHCRQLIE 490


 Score = 40.0 bits (92), Expect = 0.009
 Identities = 14/58 (24%), Positives = 34/58 (58%)
 Frame = +1

Query: 652 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 825
           VP  +V  I+G+ G ++N ++++ G  +++  D   + E    + G+P+ + KA+ ++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 208

>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
 sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic
           acid-binding protein SUB2.3)
 sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
          Length = 356

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 57/273 (20%), Positives = 102/273 (37%), Gaps = 19/273 (6%)
 Frame = +1

Query: 64  SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
           S   + LR+VV  +Q G++IGKGG +I+ + +S G   +++     PNST+R + +    
Sbjct: 94  SRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGVP 152

Query: 244 ENL-----MACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGI 408
           +++       CL  +  L ++   +     Y P      +    G     D+   P    
Sbjct: 153 QSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHA-- 210

Query: 409 NNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMN--------NQRNPMLE 564
             +   G   D Y                      G H + P++         Q++    
Sbjct: 211 -THDLEGPPLDAYSIQ-------------------GQHTISPLDLAKLNQVARQQSHFAM 250

Query: 565 RGGVTDLFGGSIRMNSIN------DVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECG 726
             G T   G       +       D ++     +T+P NL+  I+G+ G  +N++ +  G
Sbjct: 251 MHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSG 310

Query: 727 ANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 825
           A I++             I GS   I  AQ L+
Sbjct: 311 AQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,731,227
Number of Sequences: 369166
Number of extensions: 2482320
Number of successful extensions: 6377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6369
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00975

  1. Dr_sW_024_K03
  2. Dr_sW_019_C14
  3. Dr_sW_015_B10