Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K03
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein... 81 4e-15
sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprote... 80 7e-15
sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3) 67 8e-11
sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3) 67 8e-11
sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2... 56 1e-07
sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4) 55 2e-07
sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2... 55 2e-07
sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 51 3e-06
sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein ... 50 1e-05
sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4) 48 4e-05
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K (dC stretch-binding
protein) (CSBP)
sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K
sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (Transformation
up-regulated nuclear protein) (TUNP)
Length = 463
Score = 80.9 bits (198), Expect = 4e-15
Identities = 40/105 (38%), Positives = 69/105 (65%)
Frame = +1
Query: 55 YIESENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMV 234
Y S+ + +LR+++H+S AG +IG G +I+ L ++ T IKL++ CP+STDRVV +
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENT-QTTIKLFQECCPHSTDRVVLIG 196
Query: 235 SKMENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGF 369
K + ++ C++ + +L+ IKG + Y+P+ YDE+ +YGGF
Sbjct: 197 GKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETY--DYGGF 239
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = +1
Query: 640 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI 804
++VT+P++L +I+GK G+R+ + E GA+I++D + I I G+ DQI
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Score = 35.0 bits (79), Expect = 0.24
Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +1
Query: 19 AKECDYKGSSSKYIESENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTF 198
A++ + + + + ++ ++LR+++ AGAVIGKGG+ I+ L + ++
Sbjct: 24 AEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------S 77
Query: 199 CPNST--DRVVRMVSKMENLMACLENVFELLE 288
P+S+ +R++ + + +E + L+ + LE
Sbjct: 78 VPDSSGPERILSISADIETIGEILKKIIPTLE 109
Score = 32.0 bits (71), Expect = 2.1
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +1
Query: 76 IDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLM 255
I ++ + + AG++IGKGG+RI+ + G + IK+ + S DR++ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS-IKIDEPL-EGSEDRIITITGTQDQ-- 443
Query: 256 ACLENVFELLEN 291
++N LL+N
Sbjct: 444 --IQNAQYLLQN 453
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K)
Length = 463
Score = 80.1 bits (196), Expect = 7e-15
Identities = 39/102 (38%), Positives = 68/102 (66%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S+ + +LR+++H+S AG +IG G +I+ L ++ T IKL++ CP+STDRVV + K
Sbjct: 141 SDFDCELRLLIHQSLAGGIIGVKGAKIKELRENT-QTTIKLFQECCPHSTDRVVLIGGKP 199
Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGF 369
+ ++ C++ + +L+ IKG + Y+P+ YDE+ +YGGF
Sbjct: 200 DRVVECIKIILDLISESPIKGRAQPYDPNFYDETY--DYGGF 239
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = +1
Query: 640 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI 804
++VT+P++L +I+GK G+R+ + E GA+I++D + I I G+ DQI
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Score = 35.4 bits (80), Expect = 0.19
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Frame = +1
Query: 19 AKECDYKGSSSKYIESENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTF 198
A++ + + + + ++ ++LR+++ AGAVIGKGG+ I+ L + ++
Sbjct: 24 AEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------S 77
Query: 199 CPNST--DRVVRMVSKMENLMACLENVFELLEN--QAIKGTRKDYNPDNYDESLAPNYGG 366
P+S+ +R++ + + +E + L+ + LE Q T P D NY
Sbjct: 78 VPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 367 FISKD 381
F D
Sbjct: 138 FKGSD 142
Score = 32.0 bits (71), Expect = 2.1
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +1
Query: 76 IDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLM 255
I ++ + + AG++IGKGG+RI+ + G + IK+ + S DR++ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS-IKIDEPL-EGSEDRIITITGTQDQ-- 443
Query: 256 ACLENVFELLEN 291
++N LL+N
Sbjct: 444 --IQNAQYLLQN 453
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 66.6 bits (161), Expect = 8e-11
Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 6/253 (2%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S+ + LR+VV SQ G++IGKGG +I+ + +S G +++ PNST+R V +
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTP 152
Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQS 423
+ ++ C++ + ++ KG Y P + G + I +
Sbjct: 153 DAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT----------IQGQYA 202
Query: 424 VGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIR 603
+ H L K PF P Q NP G L
Sbjct: 203 IPHPDQLTKLHQLAMQQTPF----------------PPLGQTNPAFP-GEKLPLHSSEEA 245
Query: 604 MNSINDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG 765
N + + ++ S +T+P +L+ I+G+ G ++N++ + GA I++
Sbjct: 246 QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 305
Query: 766 ESIFIIRGSPDQI 804
E I G+P I
Sbjct: 306 ERQITITGTPANI 318
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 66.6 bits (161), Expect = 8e-11
Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 6/253 (2%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S+ + LR+VV SQ G++IGKGG +I+ + +S G +++ PNST+R V +
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTP 152
Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQS 423
+ ++ C++ + ++ KG Y P + G + I +
Sbjct: 153 DAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT----------IQGQYA 202
Query: 424 VGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIR 603
+ H L K PF P Q NP G L
Sbjct: 203 IPHPDQLTKLHQLAMQQTPF----------------PPLGQTNPAFP-GEKLPLHSSEEA 245
Query: 604 MNSINDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG 765
N + + ++ S +T+P +L+ I+G+ G ++N++ + GA I++
Sbjct: 246 QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 305
Query: 766 ESIFIIRGSPDQI 804
E I G+P I
Sbjct: 306 ERQITITGTPANI 318
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous
nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP)
Length = 362
Score = 55.8 bits (133), Expect = 1e-07
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 11/237 (4%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S + LR+VV SQ G++IGKGG +I+ + +S G +++ PNST+R + +
Sbjct: 94 SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGIP 152
Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPDNYDESLAPNYG------GFISKDSRHPPRRG 405
++++ C++ + ++ KG Y P + G G S H
Sbjct: 153 QSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSM 212
Query: 406 INNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLE-RGGVTD 582
N G + Y P P +H + M PM G +
Sbjct: 213 CLNPDLEGPPLEAYTIQGQYAIPQPDLTK--------LHQL-AMQQSHFPMTHGNTGFSG 263
Query: 583 LFGGSIRMNSI---NDVNSMNMS-RVTVPQNLVAAIVGKDGRRLNDLERECGANIEM 741
+ S + D ++ S +T+P +L+ I+G+ G ++N++ + GA I++
Sbjct: 264 IESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 320
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 55.5 bits (132), Expect = 2e-07
Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 2/249 (0%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S + LR+V+ SQ G++IGK G +I+ + ++ G +++ PNST+R V +
Sbjct: 98 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTG-AQVQVAGDLLPNSTERAVTVSGVP 156
Query: 244 ENLMACLENVFELLENQAIKGTRKDYNPD-NYDESLAPNYGGFISKDSRHPPRRGINNNQ 420
+ ++ C+ + ++ KG Y+P + L GF +
Sbjct: 157 DAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGF-----------SVQGQY 205
Query: 421 SVGHISDLYKSDDYMPHPNPFSR-SIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGS 597
+++ K H PF+ S+ G D G
Sbjct: 206 GAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPG--------------------------- 238
Query: 598 IRMNSINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIF 777
+ VP +L+ ++G+ G +++++ + GA+I++ GE
Sbjct: 239 ---------TQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 778 IIRGSPDQI 804
I GSP I
Sbjct: 290 TITGSPVSI 298
Score = 30.8 bits (68), Expect = 4.6
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 58 IESENEID----LRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCP 204
+E E E+ LRM++H + G++IGK GE ++ I I + + CP
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKR-IREQSSARITISEGSCP 59
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)
Length = 365
Score = 55.1 bits (131), Expect = 2e-07
Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 16/242 (6%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S + LR+VV SQ G++IGKGG +I+ + +S G +++ PNST+R + +
Sbjct: 94 SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGIP 152
Query: 244 ENLMACLENV----FELLENQAIKGTRKDYNPDNYDESLAPNYG------GFISKDSRHP 393
++++ C++ + E L KG Y P + G G S H
Sbjct: 153 QSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHT 212
Query: 394 PRRGINNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGG 573
N G + Y P P +H + M PM G
Sbjct: 213 TPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK--------LHQL-AMQQSHFPMTH--G 261
Query: 574 VTDLFGGSIRMNSINDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANI 735
T G + ++ S +T+P +L+ I+G+ G ++N++ + GA I
Sbjct: 262 NTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 321
Query: 736 EM 741
++
Sbjct: 322 KI 323
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
Length = 572
Score = 51.2 bits (121), Expect = 3e-06
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 16/261 (6%)
Frame = +1
Query: 70 NEIDLRMVVHE-----SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMV 234
N+ID + E S+ G VIG+GGE I+ L + G+ M+ + P D+ +R+
Sbjct: 156 NDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRIT 215
Query: 235 SKMENLMACLENVFELL--ENQA-IKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRG 405
+ E V E++ ++QA +G R D+N S+ + F
Sbjct: 216 GDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEM 275
Query: 406 INNNQSVGHISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDL 585
I Q+ + +K DD + + + D H ++ ER G L
Sbjct: 276 IKKIQNDAGVRIQFKPDDGISPER--AAQVMGPPDRCQHAAHIISELILTAQERDGFGGL 333
Query: 586 FGGSIRMN-----SINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDID 750
R S+ + TVP + ++GK G + + ++ GA++E+ +
Sbjct: 334 AAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
Query: 751 ---RMNMGESIFIIRGSPDQI 804
+ F IRG P QI
Sbjct: 394 PPPNSDPNLRRFTIRGVPQQI 414
Score = 35.0 bits (79), Expect = 0.24
Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Frame = +1
Query: 502 GYDDGMHNVR---------PMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMSRVT- 651
G+ D +H VR P N P+++ ++G ++ ++D + +
Sbjct: 18 GFVDALHRVRQIAAKIDSIPHLNNSTPLVD----PSVYGYGVQKRPLDDGVGNQLGALVH 73
Query: 652 ----------VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQ 801
VP +V I+G+ G +++ ++ E G I++ + + E ++ G+P+
Sbjct: 74 QRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES 133
Query: 802 I 804
I
Sbjct: 134 I 134
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (p75)
Length = 707
Score = 49.7 bits (117), Expect = 1e-05
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 13/252 (5%)
Frame = +1
Query: 88 MVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLE 267
+++ +AG VIGKGGE I+ L + G+ MI + + D+ +R++ + E
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 297
Query: 268 NVFELLEN--QAIKGTRKDYNP---DNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGH 432
V ++L N +A G R +Y D + + G + S I Q+
Sbjct: 298 MVMDILRNVTKAGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEM----IKKIQNDAG 353
Query: 433 ISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERG-----GVTDLFGGS 597
+ +K DD P + G D + + N L G G + GG
Sbjct: 354 VRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGIPGGR 410
Query: 598 IRMNSINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG---E 768
R + ++P + ++G+ G + + ++ GA +E+ G
Sbjct: 411 GRGRGQGNWGPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTS 470
Query: 769 SIFIIRGSPDQI 804
+FIIRGSP QI
Sbjct: 471 KLFIIRGSPQQI 482
Score = 35.4 bits (80), Expect = 0.19
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +1
Query: 652 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI 804
VP +V I+G+ G ++N ++++ G +++ D + E + G+P+ +
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESV 201
>sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/88 (27%), Positives = 47/88 (53%)
Frame = +1
Query: 64 SENEIDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKM 243
S + LR+V+ SQ G++IGK G +I+ + ++ G +++ PNST+R V +
Sbjct: 98 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTG-AQVQVAGDLLPNSTERAVTVSGVP 156
Query: 244 ENLMACLENVFELLENQAIKGTRKDYNP 327
+ ++ C+ + ++ KG Y+P
Sbjct: 157 DAIILCVRQICAVILESPPKGATIPYHP 184
Score = 35.4 bits (80), Expect = 0.19
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 652 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI 804
VP +L+ ++G+ G +++++ + GA+I++ GE I GSP I
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSI 298
Score = 30.4 bits (67), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 76 IDLRMVVHESQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCP 204
+ LRM++H + G++IGK GE ++ I I + + CP
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKR-IREQSSARITISEGSCP 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,464,377
Number of Sequences: 369166
Number of extensions: 2200528
Number of successful extensions: 5880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5872
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)