Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C14
(810 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein... 68 3e-11
sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprote... 68 3e-11
sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3) 62 2e-09
sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3) 62 2e-09
sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4) 54 4e-07
sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2... 50 6e-06
sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 50 1e-05
sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2... 50 1e-05
sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein ... 49 1e-05
sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 ... 43 9e-04
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K (dC stretch-binding
protein) (CSBP)
sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K
sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (Transformation
up-regulated nuclear protein) (TUNP)
Length = 463
Score = 68.2 bits (165), Expect = 3e-11
Identities = 35/89 (39%), Positives = 57/89 (64%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
S AG +IG G +I+ L ++ T IKL++ CP+STDRVV + K + ++ C++ + +L
Sbjct: 154 SLAGGIIGVKGAKIKELRENT-QTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDL 212
Query: 182 LENQAIKGTRKDYNPDNYDESLAPNYGGF 268
+ IKG + Y+P+ YDE+ +YGGF
Sbjct: 213 ISESPIKGRAQPYDPNFYDETY--DYGGF 239
Score = 53.1 bits (126), Expect = 9e-07
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +2
Query: 539 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQC 718
++VT+P++L +I+GK G+R+ + E GA+I++D + I I G+ DQI AQ
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQY 449
Query: 719 LMQLCARKFADDGF 760
L+Q ++++ F
Sbjct: 450 LLQNSVKQYSGKFF 463
Score = 30.4 bits (67), Expect = 6.0
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 8 AGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELLE 187
AG++IGKGG+RI+ + G + IK+ + S DR++ + + ++N LL+
Sbjct: 399 AGSIIGKGGQRIKQIRHESGAS-IKIDEPL-EGSEDRIITITGTQDQ----IQNAQYLLQ 452
Query: 188 N 190
N
Sbjct: 453 N 453
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K)
Length = 463
Score = 68.2 bits (165), Expect = 3e-11
Identities = 35/89 (39%), Positives = 57/89 (64%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
S AG +IG G +I+ L ++ T IKL++ CP+STDRVV + K + ++ C++ + +L
Sbjct: 154 SLAGGIIGVKGAKIKELRENT-QTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDL 212
Query: 182 LENQAIKGTRKDYNPDNYDESLAPNYGGF 268
+ IKG + Y+P+ YDE+ +YGGF
Sbjct: 213 ISESPIKGRAQPYDPNFYDETY--DYGGF 239
Score = 53.1 bits (126), Expect = 9e-07
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +2
Query: 539 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQC 718
++VT+P++L +I+GK G+R+ + E GA+I++D + I I G+ DQI AQ
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQY 449
Query: 719 LMQLCARKFADDGF 760
L+Q ++++ F
Sbjct: 450 LLQNSVKQYSGKFF 463
Score = 30.4 bits (67), Expect = 6.0
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 8 AGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELLE 187
AG++IGKGG+RI+ + G + IK+ + S DR++ + + ++N LL+
Sbjct: 399 AGSIIGKGGQRIKQIRHESGAS-IKIDEPL-EGSEDRIITITGTQDQ----IQNAQYLLQ 452
Query: 188 N 190
N
Sbjct: 453 N 453
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 62.0 bits (149), Expect = 2e-09
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 6/247 (2%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
SQ G++IGKGG +I+ + +S G +++ PNST+R V + + ++ C++ + +
Sbjct: 107 SQCGSLIGKGGSKIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVV 165
Query: 182 LENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYKSDDY 361
+ KG Y P + G + I ++ H L K
Sbjct: 166 MLESPPKGATIPYRPKPASTPVIFAGGQAYT----------IQGQYAIPHPDQLTKLHQL 215
Query: 362 MPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMS 541
PF P Q NP G L N + + ++ S
Sbjct: 216 AMQQTPF----------------PPLGQTNPAFP-GEKLPLHSSEEAQNLMGQSSGLDAS 258
Query: 542 ------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI 703
+T+P +L+ I+G+ G ++N++ + GA I++ E I G+P I
Sbjct: 259 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 318
Query: 704 YKAQCLM 724
AQ L+
Sbjct: 319 SLAQYLI 325
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 62.0 bits (149), Expect = 2e-09
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 6/247 (2%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
SQ G++IGKGG +I+ + +S G +++ PNST+R V + + ++ C++ + +
Sbjct: 107 SQCGSLIGKGGSKIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVV 165
Query: 182 LENQAIKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYKSDDY 361
+ KG Y P + G + I ++ H L K
Sbjct: 166 MLESPPKGATIPYRPKPASTPVIFAGGQAYT----------IQGQYAIPHPDQLTKLHQL 215
Query: 362 MPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMS 541
PF P Q NP G L N + + ++ S
Sbjct: 216 AMQQTPF----------------PPLGQTNPAFP-GEKLPLHSSEEAQNLMGQSSGLDAS 258
Query: 542 ------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI 703
+T+P +L+ I+G+ G ++N++ + GA I++ E I G+P I
Sbjct: 259 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 318
Query: 704 YKAQCLM 724
AQ L+
Sbjct: 319 SLAQYLI 325
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 54.3 bits (129), Expect = 4e-07
Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 2/246 (0%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
SQ G++IGK G +I+ + ++ G +++ PNST+R V + + ++ C+ + +
Sbjct: 111 SQCGSLIGKAGTKIKEIRETTG-AQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAV 169
Query: 182 LENQAIKGTRKDYNPD-NYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYKSDD 358
+ KG Y+P + L GF + +++ K
Sbjct: 170 ILESPPKGATIPYHPSLSLGTVLLSANQGF-----------SVQGQYGAVTPAEVTKLQQ 218
Query: 359 YMPHPNPFSR-SIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMN 535
H PF+ S+ G D G +
Sbjct: 219 LSSHAVPFATPSVVPGLDPGTQT------------------------------------S 242
Query: 536 MSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQ 715
VP +L+ ++G+ G +++++ + GA+I++ GE I GSP I AQ
Sbjct: 243 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302
Query: 716 CLMQLC 733
L+ C
Sbjct: 303 YLITAC 308
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous
nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP)
Length = 362
Score = 50.4 bits (119), Expect = 6e-06
Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 11/254 (4%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
SQ G++IGKGG +I+ + +S G +++ PNST+R + + ++++ C++ + +
Sbjct: 107 SQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVV 165
Query: 182 LENQAIKGTRKDYNPDNYDESLAPNYG------GFISKDSRHPPRRGINNNQSVGHISDL 343
+ KG Y P + G G S H N G +
Sbjct: 166 MLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEA 225
Query: 344 YKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLE-RGGVTDLFGGSIRMNSI-- 514
Y P P +H + M PM G + + S +
Sbjct: 226 YTIQGQYAIPQPDLTK--------LHQL-AMQQSHFPMTHGNTGFSGIESSSPEVKGYWA 276
Query: 515 -NDVNSMNMS-RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRG 688
D ++ S +T+P +L+ I+G+ G ++N++ + GA I++ + I G
Sbjct: 277 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG 336
Query: 689 SPDQIYKAQCLMQL 730
S I AQ L+ +
Sbjct: 337 SAASISLAQYLINV 350
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
Length = 572
Score = 49.7 bits (117), Expect = 1e-05
Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 11/252 (4%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFEL 181
S+ G VIG+GGE I+ L + G+ M+ + P D+ +R+ + E V E+
Sbjct: 172 SKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEI 231
Query: 182 L--ENQA-IKGTRKDYNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYKS 352
+ ++QA +G R D+N S+ + F I Q+ + +K
Sbjct: 232 IREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 353 DDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMN-----SIN 517
DD + + + D H ++ ER G L R S+
Sbjct: 292 DDGISPER--AAQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVG 349
Query: 518 DVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDID---RMNMGESIFIIRG 688
+ TVP + ++GK G + + ++ GA++E+ + + F IRG
Sbjct: 350 APGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRG 409
Query: 689 SPDQIYKAQCLM 724
P QI A+ L+
Sbjct: 410 VPQQIEVARQLI 421
Score = 37.7 bits (86), Expect = 0.037
Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Frame = +2
Query: 401 GYDDGMHNVR---------PMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMSRVT- 550
G+ D +H VR P N P+++ ++G ++ ++D + +
Sbjct: 18 GFVDALHRVRQIAAKIDSIPHLNNSTPLVD----PSVYGYGVQKRPLDDGVGNQLGALVH 73
Query: 551 ----------VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQ 700
VP +V I+G+ G +++ ++ E G I++ + + E ++ G+P+
Sbjct: 74 QRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES 133
Query: 701 IYKAQCLM 724
I +A+ L+
Sbjct: 134 IEQAKRLL 141
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 545 VTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQI-YKAQCL 721
V+VP+ V ++G++G + ++ + G I+ D E + G PD+ + A +
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHII 317
Query: 722 MQLCARKFADDGF 760
+L DGF
Sbjct: 318 SELILTAQERDGF 330
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)
Length = 365
Score = 49.7 bits (117), Expect = 1e-05
Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 16/259 (6%)
Frame = +2
Query: 2 SQAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENV--- 172
SQ G++IGKGG +I+ + +S G +++ PNST+R + + ++++ C++ +
Sbjct: 107 SQCGSLIGKGGCKIKEIRESTG-AQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVV 165
Query: 173 -FELLENQAIKGTRKDYNPDNYDESLAPNYG------GFISKDSRHPPRRGINNNQSVGH 331
E L KG Y P + G G S H N G
Sbjct: 166 MLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGP 225
Query: 332 ISDLYKSDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMNS 511
+ Y P P +H + M PM G T G
Sbjct: 226 PLEAYTIQGQYAIPQPDLTK--------LHQL-AMQQSHFPMTH--GNTGFSGIESSSPE 274
Query: 512 INDVNSMNMS------RVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESI 673
+ ++ S +T+P +L+ I+G+ G ++N++ + GA I++ +
Sbjct: 275 VKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 334
Query: 674 FIIRGSPDQIYKAQCLMQL 730
I GS I AQ L+ +
Sbjct: 335 VTITGSAASISLAQYLINV 353
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (p75)
Length = 707
Score = 49.3 bits (116), Expect = 1e-05
Identities = 59/254 (23%), Positives = 101/254 (39%), Gaps = 13/254 (5%)
Frame = +2
Query: 5 QAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELL 184
+AG VIGKGGE I+ L + G+ MI + + D+ +R++ + E V ++L
Sbjct: 244 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 303
Query: 185 EN--QAIKGTRKDYNP---DNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYK 349
N +A G R +Y D + + G + S I Q+ + +K
Sbjct: 304 RNVTKAGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEM----IKKIQNDAGVRIQFK 359
Query: 350 SDDYMPHPNPFSRSIPHGYDDGMHNVRPMNNQRNPMLERG-----GVTDLFGGSIRMNSI 514
DD P + G D + + N L G G + GG R
Sbjct: 360 QDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGIPGGRGRGRGQ 416
Query: 515 NDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMG---ESIFIIR 685
+ ++P + ++G+ G + + ++ GA +E+ G +FIIR
Sbjct: 417 GNWGPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLFIIR 476
Query: 686 GSPDQIYKAQCLMQ 727
GSP QI + L++
Sbjct: 477 GSPQQIDHCRQLIE 490
Score = 40.0 bits (92), Expect = 0.008
Identities = 14/58 (24%), Positives = 34/58 (58%)
Frame = +2
Query: 551 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 724
VP +V I+G+ G ++N ++++ G +++ D + E + G+P+ + KA+ ++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 208
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (MAP2 RNA
trans-acting protein 1) (MARTA1)
Length = 721
Score = 43.1 bits (100), Expect = 9e-04
Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 18/259 (6%)
Frame = +2
Query: 5 QAGAVIGKGGERIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELL 184
+AG VIGKGGE I+ L + G+ MI + + D+ +R++ + E V ++L
Sbjct: 245 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
Query: 185 --ENQAIKGTRKDYNP---DNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYK 349
+Q G R +Y D + + G + S I Q+ + +K
Sbjct: 305 RERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEM----IKKIQNDAGVRIQFK 360
Query: 350 SDD--------YMPHPNPFSRSIPHGYDDGMHNVR--PMNNQRNPMLERGGVTDLFGGSI 499
DD ++ P +D + ++R P P + GG G
Sbjct: 361 QDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGAPGMPPGG---RGRGRG 417
Query: 500 RMNSINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGE---S 670
+ N M S +P + ++G+ G + + ++ GA +E+ G+
Sbjct: 418 QGNWGPPGGEMTFS---IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFK 474
Query: 671 IFIIRGSPDQIYKAQCLMQ 727
+F+IRGSP QI A+ L++
Sbjct: 475 LFVIRGSPQQIDHAKQLIE 493
Score = 40.0 bits (92), Expect = 0.008
Identities = 14/58 (24%), Positives = 34/58 (58%)
Frame = +2
Query: 551 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 724
VP +V I+G+ G ++N ++++ G +++ D + E + G+P+ + KA+ ++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML 209
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,327,332
Number of Sequences: 369166
Number of extensions: 2284917
Number of successful extensions: 5716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5710
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)