Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B10
(774 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein... 59 1e-08
sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprote... 59 1e-08
sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3) 45 2e-04
sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3) 45 2e-04
sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4) 41 0.003
sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4) 41 0.003
sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 41 0.004
sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein 40 0.007
sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein ... 40 0.007
sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein 40 0.007
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K (dC stretch-binding
protein) (CSBP)
sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K
sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (Transformation
up-regulated nuclear protein) (TUNP)
Length = 463
Score = 58.9 bits (141), Expect = 1e-08
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 35 TMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELLENQAIKGTRKDYNPDNYDESLA 214
T IKL++ CP+STDRVV + K + ++ C++ + +L+ IKG + Y+P+ YDE+
Sbjct: 176 TTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETY- 234
Query: 215 PNYGGF 232
+YGGF
Sbjct: 235 -DYGGF 239
Score = 53.1 bits (126), Expect = 8e-07
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +2
Query: 503 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQC 682
++VT+P++L +I+GK G+R+ + E GA+I++D + I I G+ DQI AQ
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQY 449
Query: 683 LMQLCARKFADDGF 724
L+Q ++++ F
Sbjct: 450 LLQNSVKQYSGKFF 463
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K)
Length = 463
Score = 58.9 bits (141), Expect = 1e-08
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 35 TMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELLENQAIKGTRKDYNPDNYDESLA 214
T IKL++ CP+STDRVV + K + ++ C++ + +L+ IKG + Y+P+ YDE+
Sbjct: 176 TTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETY- 234
Query: 215 PNYGGF 232
+YGGF
Sbjct: 235 -DYGGF 239
Score = 53.1 bits (126), Expect = 8e-07
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +2
Query: 503 SRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQC 682
++VT+P++L +I+GK G+R+ + E GA+I++D + I I G+ DQI AQ
Sbjct: 390 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQY 449
Query: 683 LMQLCARKFADDGF 724
L+Q ++++ F
Sbjct: 450 LLQNSVKQYSGKFF 463
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 45.1 bits (105), Expect = 2e-04
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 6/235 (2%)
Frame = +2
Query: 2 RIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELLENQAIKGTRKD 181
+I+ + +S G +++ PNST+R V + + ++ C++ + ++ KG
Sbjct: 119 KIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIP 177
Query: 182 YNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYKSDDYMPHPNPFSRSIP 361
Y P + G + I ++ H L K PF
Sbjct: 178 YRPKPASTPVIFAGGQAYT----------IQGQYAIPHPDQLTKLHQLAMQQTPF----- 222
Query: 362 HGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMS------RVTVPQ 523
P Q NP G L N + + ++ S +T+P
Sbjct: 223 -----------PPLGQTNPAFP-GEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPN 270
Query: 524 NLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 688
+L+ I+G+ G ++N++ + GA I++ E I G+P I AQ L+
Sbjct: 271 DLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 45.1 bits (105), Expect = 2e-04
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 6/235 (2%)
Frame = +2
Query: 2 RIRNLIDSHGMTMIKLYKTFCPNSTDRVVRMVSKMENLMACLENVFELLENQAIKGTRKD 181
+I+ + +S G +++ PNST+R V + + ++ C++ + ++ KG
Sbjct: 119 KIKEIRESTG-AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIP 177
Query: 182 YNPDNYDESLAPNYGGFISKDSRHPPRRGINNNQSVGHISDLYKSDDYMPHPNPFSRSIP 361
Y P + G + I ++ H L K PF
Sbjct: 178 YRPKPASTPVIFAGGQAYT----------IQGQYAIPHPDQLTKLHQLAMQQTPF----- 222
Query: 362 HGYDDGMHNVRPMNNQRNPMLERGGVTDLFGGSIRMNSINDVNSMNMS------RVTVPQ 523
P Q NP G L N + + ++ S +T+P
Sbjct: 223 -----------PPLGQTNPAFP-GEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPN 270
Query: 524 NLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 688
+L+ I+G+ G ++N++ + GA I++ E I G+P I AQ L+
Sbjct: 271 DLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 41.2 bits (95), Expect = 0.003
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 515 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLMQL 694
VP +L+ ++G+ G +++++ + GA+I++ GE I GSP I AQ L+
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Query: 695 C 697
C
Sbjct: 308 C 308
>sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 41.2 bits (95), Expect = 0.003
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 515 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLMQL 694
VP +L+ ++G+ G +++++ + GA+I++ GE I GSP I AQ L+
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Query: 695 C 697
C
Sbjct: 308 C 308
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
Length = 769
Score = 40.8 bits (94), Expect = 0.004
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = +2
Query: 515 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQCLM 688
VP +V I+G+ G ++N ++++ G +++ D + E + GSP+ + KA+ ++
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLML 272
Score = 33.5 bits (75), Expect = 0.66
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 512 TVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGE---SIFIIRGSPDQIYKAQ 679
++P + ++G+ G + + ++ GA +E+ G+ +FIIRGSP QI A+
Sbjct: 492 SIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAK 550
Score = 31.6 bits (70), Expect = 2.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 509 VTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQ 664
V VP++ V ++G+ G + ++ + G I+ D E I I G P++
Sbjct: 390 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPER 441
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein
Length = 606
Score = 40.0 bits (92), Expect = 0.007
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 515 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQ 679
VPQ V I+G+ G + L ++ GA I++D + + E + +I G P Q+ KA+
Sbjct: 59 VPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQVCKAK 112
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP)
Length = 651
Score = 40.0 bits (92), Expect = 0.007
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = +2
Query: 443 DLFGGSIRMNSINDVNSMNMSRVTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMN 622
D FG + S+ VP +V I+G+ G +++ +++E G I++ D
Sbjct: 79 DSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGG 138
Query: 623 MGESIFIIRGSPDQIYKAQCLMQLCARK 706
+ E ++ G+P+ + A+ L+ K
Sbjct: 139 LPERSCMLTGTPESVQSAKRLLDQIVEK 166
Score = 34.7 bits (78), Expect = 0.30
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 515 VPQNLVAAIVGKDGRRLNDLERECGANIEMDID---RMNMGESIFIIRGSPDQIYKAQCL 685
VP I+GK G + + ++ GA IE+ + +F IRG+P QI A+ L
Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438
Query: 686 MQ 691
++
Sbjct: 439 IE 440
Score = 31.2 bits (69), Expect = 3.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 509 VTVPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKA 676
V +P+ V ++G++G + ++ + G I+ D + I I G PD+ A
Sbjct: 276 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHA 331
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein
Length = 560
Score = 40.0 bits (92), Expect = 0.007
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 515 VPQNLVAAIVGKDGRRLNDLERECGANIEMDIDRMNMGESIFIIRGSPDQIYKAQ 679
VPQ V I+G+ G + L ++ GA I++D + + E + +I G P Q+ KA+
Sbjct: 59 VPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQVCKAK 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,486,496
Number of Sequences: 369166
Number of extensions: 2180998
Number of successful extensions: 5371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5364
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)