Planaria EST Database

DrC_00948

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00948
         (1110 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38990|PAK1_YEAST  Serine/threonine-protein kinase PAK1         33   1.1  
sp|Q9D8N3|TM86A_MOUSE  Transmembrane protein 86A                   33   1.9  
sp|P47152|YJ85_YEAST  Hypothetical 19.0 kDa protein in NNF1-...    32   3.3  
sp|Q00402|NUM1_YEAST  Nuclear migration protein NUM1               32   4.3  
sp|P79191|FPRL2_MACMU  FMLP-related receptor II (FMLP-R-II) ...    32   4.3  
sp|O04904|PYRC_ARATH  Dihydroorotase, mitochondrial precurso...    30   9.5  

>sp|P38990|PAK1_YEAST Serine/threonine-protein kinase PAK1
          Length = 1142

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = +1

Query: 28  KVQKLFSFLQNYTIGRNTKLKEQVSVIKKQI*NHKINLLWFHNFLFRRK-------CSRF 186
           K +K F+F+++  I  N K+K +++++KK    H + L+   + L  RK       CSR 
Sbjct: 170 KQRKFFTFIKSSKISENDKIKREIAIMKKCHHKHVVQLIEVLDDLKSRKIYLVLEYCSRG 229

Query: 187 AIKF 198
            +K+
Sbjct: 230 EVKW 233

>sp|Q9D8N3|TM86A_MOUSE Transmembrane protein 86A
          Length = 241

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 316 MAHSGIGGMILFLIGSEAEIVA---WRAMIGRRLILSSSGWTEI 194
           + + G+ G   +L+G    +++   WRAM G RL+ ++  WTE+
Sbjct: 134 LLYPGLSGAFTYLVGVYVALISFMGWRAMAGLRLVGAAWRWTEL 177

>sp|P47152|YJ85_YEAST Hypothetical 19.0 kDa protein in NNF1-STE24 intergenic region
          Length = 169

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 954  LHTRTYLQTHTHTHIFIY 1007
            ++T T+  THTHTHI+IY
Sbjct: 16   MNTHTHTHTHTHTHIYIY 33

>sp|Q00402|NUM1_YEAST Nuclear migration protein NUM1
          Length = 2748

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
 Frame = +3

Query: 72  KKYEIKRTSF---GDQEANLKSQNKSFVVPQFP--VSSKVFKIRNQISVHPDDDNIKRRP 236
           KKY  K        D   NL  +++S   P+    ++ +V +  N I++ P+DDN  ++ 
Sbjct: 342 KKYSEKNNMILLSNDSYKNLLQKSESASKPKDDELMTKEVAENLNMIAL-PNDDNYSKKE 400

Query: 237 IIARHATISASLXXXXXXXXXXXECAISTEEIANFSKSIKRP--NILP---------PIN 383
                     SL              +  EE  N ++S+  P  N L          PI+
Sbjct: 401 F---------SLESHIKYLEASGYKVLPLEEFENLNESLSNPSYNYLKEKLQALKKIPID 451

Query: 384 SMKANFQMLNSIGSVLPKSSTSDTSVYPQDSYVDSFQTCEVKNYDI-HMKNVGENRNIDK 560
               N     +I  +LP +S  D  + P   Y D F++  VKN  I  MK   E +N  +
Sbjct: 452 QSTFNLLKEPTIDFLLPLTSKIDCLIIPTKDYNDLFES--VKNPSIEQMKKCLEAKNDLQ 509

Query: 561 NSSC 572
           ++ C
Sbjct: 510 SNIC 513

>sp|P79191|FPRL2_MACMU FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
           2)
          Length = 349

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = -2

Query: 611 FHMNSIGVRSDWPATT-------VLVNISIFTNIFHVNIIIL 507
           FHM S+ +R  WP  T       V+++I++F +++ + II L
Sbjct: 80  FHMVSVAMREKWPFGTFLCKLVHVMIDINLFVSVYLITIIAL 121

>sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial precursor (DHOase)
          Length = 377

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 312 AISTEEIANFSKSIKRPNILPPINSMKANFQMLNSIGSVLPKSSTSD 452
           A+     +NF ++I  PN+ PP+ S  A       I   LP  S+ D
Sbjct: 55  AVVPHSASNFKRAIVMPNLKPPVTSTAAAIIYRKFIMKALPSESSFD 101

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,879,711
Number of Sequences: 369166
Number of extensions: 2411331
Number of successful extensions: 6561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6539
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12249817620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00948

  1. Dr_sW_023_P19
  2. Dr_sW_012_G01
  3. Dr_sW_007_G02