Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G01
(666 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47152|YJ85_YEAST Hypothetical 19.0 kDa protein in NNF1-... 32 1.5
sp|P79191|FPRL2_MACMU FMLP-related receptor II (FMLP-R-II) ... 32 2.0
sp|P25611|YCZ6_YEAST Putative 95.7 kDa transcriptional regu... 30 4.3
sp|P34586|TRPL_CAEEL Transient-receptor-potential-like prot... 30 5.7
sp|P79178|FPRL2_GORGO FMLP-related receptor II (FMLP-R-II) ... 30 5.7
>sp|P47152|YJ85_YEAST Hypothetical 19.0 kDa protein in NNF1-STE24 intergenic region
Length = 169
Score = 32.0 bits (71), Expect = 1.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 510 LHTRTYLQTHTHTHIFIY 563
++T T+ THTHTHI+IY
Sbjct: 16 MNTHTHTHTHTHTHIYIY 33
>sp|P79191|FPRL2_MACMU FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
2)
Length = 349
Score = 31.6 bits (70), Expect = 2.0
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = -2
Query: 167 FHMNSIGVRSDWPATT-------VLVNISIFTNIFHVNIIIL 63
FHM S+ +R WP T V+++I++F +++ + II L
Sbjct: 80 FHMVSVAMREKWPFGTFLCKLVHVMIDINLFVSVYLITIIAL 121
>sp|P25611|YCZ6_YEAST Putative 95.7 kDa transcriptional regulatory protein in PAU3-AAD3
intergenic region
Length = 832
Score = 30.4 bits (67), Expect = 4.3
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Frame = +3
Query: 24 QDSYVDSFQTCEVKNYDIHMKNVG-----ENGNIDKNSSCGPVRSDSNAVHVELEHLMDI 188
QDSY ++QT + Y +++ +VG NG DK SS G + V L+ +D
Sbjct: 687 QDSYFGAYQTVPMFRYVVYLIDVGGLVSVTNGFWDKISSDGEIPPKVQQA-VRLKWGLDC 745
Query: 189 NNS-----SLVSSPASVKF 230
NNS L+SS + F
Sbjct: 746 NNSRRIKQKLISSQSLQSF 764
>sp|P34586|TRPL_CAEEL Transient-receptor-potential-like protein (TRP homologous cation
channel protein 1)
Length = 1027
Score = 30.0 bits (66), Expect = 5.7
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 288 FFILLLISCFSIALS-IYWY*IPNFDLPL 371
F +L+IS FSI L+ +YWY PN D+ L
Sbjct: 561 FIFVLIISSFSIGLAQLYWYYDPNTDVCL 589
>sp|P79178|FPRL2_GORGO FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
2)
Length = 349
Score = 30.0 bits (66), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = -2
Query: 167 FHMNSIGVRSDWP-------ATTVLVNISIFTNIFHVNIIIL 63
FHM S+ +R WP V+++I++F +++ + II L
Sbjct: 80 FHMVSVAMREKWPFGSFLCKLVHVMIDINLFVSVYLITIIAL 121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,517,934
Number of Sequences: 369166
Number of extensions: 1250032
Number of successful extensions: 3348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3325
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)