Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P19
(804 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38990|PAK1_YEAST Serine/threonine-protein kinase PAK1 33 0.70
sp|Q9D8N3|TM86A_MOUSE Transmembrane protein 86A 33 1.2
sp|Q00402|NUM1_YEAST Nuclear migration protein NUM1 32 2.7
sp|P79191|FPRL2_MACMU FMLP-related receptor II (FMLP-R-II) ... 32 2.7
sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial precurso... 30 5.9
sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ... 30 7.7
sp|P79178|FPRL2_GORGO FMLP-related receptor II (FMLP-R-II) ... 30 7.7
sp|O93829|BET4_CANAL Geranylgeranyl transferase type II alp... 30 7.7
>sp|P38990|PAK1_YEAST Serine/threonine-protein kinase PAK1
Length = 1142
Score = 33.5 bits (75), Expect = 0.70
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = -1
Query: 777 KVQKLFSFLQNYTIGRNTKLKEQVSVIKKQI*NHKINLLWFHNFLFRRK-------CSRF 619
K +K F+F+++ I N K+K +++++KK H + L+ + L RK CSR
Sbjct: 170 KQRKFFTFIKSSKISENDKIKREIAIMKKCHHKHVVQLIEVLDDLKSRKIYLVLEYCSRG 229
Query: 618 AIKF 607
+K+
Sbjct: 230 EVKW 233
>sp|Q9D8N3|TM86A_MOUSE Transmembrane protein 86A
Length = 241
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 489 MAHSGIGGMILFLIGSEAEIVA---WRAMIGRRLILSSSGWTEI 611
+ + G+ G +L+G +++ WRAM G RL+ ++ WTE+
Sbjct: 134 LLYPGLSGAFTYLVGVYVALISFMGWRAMAGLRLVGAAWRWTEL 177
>sp|Q00402|NUM1_YEAST Nuclear migration protein NUM1
Length = 2748
Score = 31.6 bits (70), Expect = 2.7
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
Frame = -3
Query: 733 KKYEIKRTSF---GDQEANLKSQNKSFVVPQFP--VSSKVFKIRNQISVHPDDDNIKRRP 569
KKY K D NL +++S P+ ++ +V + N I++ P+DDN ++
Sbjct: 342 KKYSEKNNMILLSNDSYKNLLQKSESASKPKDDELMTKEVAENLNMIAL-PNDDNYSKKE 400
Query: 568 IIARHATISASLXXXXXXXXXXPECAISTEEIANFSKSIKRP--NILP---------PIN 422
SL + EE N ++S+ P N L PI+
Sbjct: 401 F---------SLESHIKYLEASGYKVLPLEEFENLNESLSNPSYNYLKEKLQALKKIPID 451
Query: 421 SMKANFQMLNSIGSVLPKSSTSDTSVYPQDSYVDSFQTCEVKNYDI-HMKNVGENRNIDK 245
N +I +LP +S D + P Y D F++ VKN I MK E +N +
Sbjct: 452 QSTFNLLKEPTIDFLLPLTSKIDCLIIPTKDYNDLFES--VKNPSIEQMKKCLEAKNDLQ 509
Query: 244 NSSC 233
++ C
Sbjct: 510 SNIC 513
>sp|P79191|FPRL2_MACMU FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
2)
Length = 349
Score = 31.6 bits (70), Expect = 2.7
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = +2
Query: 194 FHMNSIGVRSDWPATT-------VLVNISIFTNIFHVNIIIL 298
FHM S+ +R WP T V+++I++F +++ + II L
Sbjct: 80 FHMVSVAMREKWPFGTFLCKLVHVMIDINLFVSVYLITIIAL 121
>sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial precursor (DHOase)
Length = 377
Score = 30.4 bits (67), Expect = 5.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 493 AISTEEIANFSKSIKRPNILPPINSMKANFQMLNSIGSVLPKSSTSD 353
A+ +NF ++I PN+ PP+ S A I LP S+ D
Sbjct: 55 AVVPHSASNFKRAIVMPNLKPPVTSTAAAIIYRKFIMKALPSESSFD 101
>sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ATPase
Length = 1005
Score = 30.0 bits (66), Expect = 7.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -3
Query: 796 ETELNNKSAEIVLLSTKLHNWKKYEIKRTSFGDQEANLKSQNKSFVVPQFPVSSKVFKIR 617
+T+LNNK E+ ++ K+ +K K D+E NLK+ ++ Q + K++
Sbjct: 522 KTQLNNKYTELEEINKKIREIEKDIEKLKKEIDKEENLKTLKTLYLEKQSQIEELELKLK 581
Query: 616 N 614
N
Sbjct: 582 N 582
>sp|P79178|FPRL2_GORGO FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
2)
Length = 349
Score = 30.0 bits (66), Expect = 7.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = +2
Query: 194 FHMNSIGVRSDWP-------ATTVLVNISIFTNIFHVNIIIL 298
FHM S+ +R WP V+++I++F +++ + II L
Sbjct: 80 FHMVSVAMREKWPFGSFLCKLVHVMIDINLFVSVYLITIIAL 121
>sp|O93829|BET4_CANAL Geranylgeranyl transferase type II alpha subunit (Type II protein
geranyl-geranyltransferase alpha subunit)
(GGTase-II-alpha) (PGGT) (YPT1/SEC4 proteins
geranylgeranyltransferase alpha subunit)
Length = 371
Score = 30.0 bits (66), Expect = 7.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 494 TFWNWRNDFVFDWK*G*NCSMASDDWTTFNIIVIRMDRNLI-ANLEHFRRNRKLWNHKRF 670
T WN+R + + + N S ++D ++ D N + L+ F + +WNH+R+
Sbjct: 65 TIWNYRREILIN-----NYSSSNDKDDQIYEDILNQDLNFVLVQLKKFPKCYWIWNHRRW 119
Query: 671 IL 676
+L
Sbjct: 120 LL 121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,252,046
Number of Sequences: 369166
Number of extensions: 1858586
Number of successful extensions: 5202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5201
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)