Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G02
(256 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47152|YJ85_YEAST Hypothetical 19.0 kDa protein in NNF1-... 29 2.9
sp|P16344|ITR4_RADMA Kunitz-type trypsin inhibitor IV 29 3.8
>sp|P47152|YJ85_YEAST Hypothetical 19.0 kDa protein in NNF1-STE24 intergenic region
Length = 169
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 100 VCTAHTYIFTDTHTHIFIY 156
V HT+ T THTHI+IY
Sbjct: 15 VMNTHTHTHTHTHTHIYIY 33
>sp|P16344|ITR4_RADMA Kunitz-type trypsin inhibitor IV
Length = 56
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 126 KYVRVCSAYYHRWTITT*NTDKCTPIIYSDK*GN 25
K V C+AY+ R+ + T KCTP IY GN
Sbjct: 8 KVVGPCTAYFPRFYFDS-ETGKCTPFIYGGCEGN 40
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,866,099
Number of Sequences: 369166
Number of extensions: 386607
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 68,354,980
effective HSP length: 55
effective length of database: 58,194,555
effective search space used: 1687642095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)