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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00936
         (370 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80944|VE2_HPV60  Regulatory protein E2                         29   3.9  
sp|P22686|CB2_CHLMO  Chlorophyll a-b binding protein of LHCI...    28   6.6  
sp|Q9NH52|MES4_CAEEL  Probable histone methyltransferase mes...    28   6.6  
sp|P20865|CB2_DUNSA  Chlorophyll a-b binding protein of LHCI...    28   8.6  

>sp|Q80944|VE2_HPV60 Regulatory protein E2
          Length = 404

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 94  YRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYLCNVKPAKTGRLPLFTCEGPSPVSTNG 273
           Y Q G   V+   ++ISA  +S  K   DD         +K G+ P F     SP +T+G
Sbjct: 182 YSQTGTWTVHYKNQIISAPVTSSSKQSSDD-------YTSKAGQQPHFFASSSSPTTTDG 234

>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplast
           precursor (CAB) (LHCP)
          Length = 256

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 43  LVALIAVSNASVFMGRGYRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYL-CNVKPAKT 219
           +VA +AV    + +  GYR NG         +   E      +  D + +    VK  K 
Sbjct: 148 IVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKN 207

Query: 220 GRLPLFTCEG 249
           GRL +F+C G
Sbjct: 208 GRLAMFSCFG 217

>sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect
           sterile 4 protein)
          Length = 898

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 178 DDNCYLCNVKPAKTGRLPLFTCEG 249
           D  C +C+ +  KTG+  L TC G
Sbjct: 126 DSKCVICHEEKDKTGKSDLITCHG 149

>sp|P20865|CB2_DUNSA Chlorophyll a-b binding protein of LHCII type I, chloroplast
           precursor (CAB) (LHCP)
          Length = 273

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 43  LVALIAVSNASVFMGRGYRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYL-CNVKPAKT 219
           +VA +AV    + +  GYR NG         +   E      +  D + +    VK  K 
Sbjct: 166 IVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKN 225

Query: 220 GRLPLFTCEG 249
           GRL +F C G
Sbjct: 226 GRLAMFACLG 235

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,721,978
Number of Sequences: 369166
Number of extensions: 675247
Number of successful extensions: 1299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_023_K15
2. Dr_sW_018_L05
3. Dr_sW_020_B04
4. Dr_sW_016_K08