Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_K08
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80944|VE2_HPV60 Regulatory protein E2 30 2.2
sp|P81282|CSPG2_BOVIN Versican core protein precursor (Larg... 28 6.5
>sp|Q80944|VE2_HPV60 Regulatory protein E2
Length = 404
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 79 YRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYLCNVKPAKTGRLPSFTCEGPSPVSTNG 258
Y Q G V+ ++ISA +S K DD +K G+ P F SP +T+G
Sbjct: 182 YSQTGTWTVHYKNQIISAPVTSSSKQSSDDYT-------SKAGQQPHFFASSSSPTTTDG 234
>sp|P81282|CSPG2_BOVIN Versican core protein precursor (Large fibroblast proteoglycan)
(Chondroitin sulfate proteoglycan core protein 2) (PG-M)
(Glial hyaluronate-binding protein) (GHAP)
Length = 3381
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 151 KVYKDDNCYLCNVKPAKTGRLPSFTCEGPSPVSTNGK 261
K + D N Y+ V+ KTGR+ F+ G P+ + K
Sbjct: 1318 KFHPDINVYIIEVRENKTGRMSDFSVSG-HPIDSESK 1353
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,896,471
Number of Sequences: 369166
Number of extensions: 641630
Number of successful extensions: 1347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)