Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_B04
(270 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80944|VE2_HPV60 Regulatory protein E2 29 3.9
sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes... 28 6.6
>sp|Q80944|VE2_HPV60 Regulatory protein E2
Length = 404
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 9 YRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYLCNVKPAKTGRLPLFTCEGPSPVSTNG 188
Y Q G V+ ++ISA +S K DD +K G+ P F SP +T+G
Sbjct: 182 YSQTGTWTVHYKNQIISAPVTSSSKQSSDD-------YTSKAGQQPHFFASSSSPTTTDG 234
>sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect
sterile 4 protein)
Length = 898
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 93 DDNCYLCNVKPAKTGRLPLFTCEG 164
D C +C+ + KTG+ L TC G
Sbjct: 126 DSKCVICHEEKDKTGKSDLITCHG 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,784,943
Number of Sequences: 369166
Number of extensions: 458379
Number of successful extensions: 972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)