Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_L05
(323 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80944|VE2_HPV60 Regulatory protein E2 29 3.8
sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCI... 28 6.5
sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes... 28 6.5
sp|P20865|CB2_DUNSA Chlorophyll a-b binding protein of LHCI... 28 8.5
>sp|Q80944|VE2_HPV60 Regulatory protein E2
Length = 404
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 62 YRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYLCNVKPAKTGRLPLFTCEGPSPVSTNG 241
Y Q G V+ ++ISA +S K DD +K G+ P F SP +T+G
Sbjct: 182 YSQTGTWTVHYKNQIISAPVTSSSKQSSDD-------YTSKAGQQPHFFASSSSPTTTDG 234
>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplast
precursor (CAB) (LHCP)
Length = 256
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 11 LVALIAVSNASVFMGRGYRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYL-CNVKPAKT 187
+VA +AV + + GYR NG + E + D + + VK K
Sbjct: 148 IVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKN 207
Query: 188 GRLPLFTCEG 217
GRL +F+C G
Sbjct: 208 GRLAMFSCFG 217
>sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect
sterile 4 protein)
Length = 898
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 146 DDNCYLCNVKPAKTGRLPLFTCEG 217
D C +C+ + KTG+ L TC G
Sbjct: 126 DSKCVICHEEKDKTGKSDLITCHG 149
>sp|P20865|CB2_DUNSA Chlorophyll a-b binding protein of LHCII type I, chloroplast
precursor (CAB) (LHCP)
Length = 273
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 11 LVALIAVSNASVFMGRGYRQNGAAYVNIFGKVISAEESSVQKVYKDDNCYL-CNVKPAKT 187
+VA +AV + + GYR NG + E + D + + VK K
Sbjct: 166 IVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKN 225
Query: 188 GRLPLFTCEG 217
GRL +F C G
Sbjct: 226 GRLAMFACLG 235
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,452,176
Number of Sequences: 369166
Number of extensions: 575505
Number of successful extensions: 1175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)