Planaria EST Database

DrC_00933

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00933
         (980 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8UVX0|PIWI_BRARE  Piwi protein                                180   5e-45
sp|Q9VKM1|PIWI_DROME  Piwi protein                                168   2e-41
sp|Q9VUQ5|AGO2_DROME  Argonaute 2 protein                         102   2e-21
sp|P34681|YO43_CAEEL  Hypothetical protein ZK757.3 in chromo...   102   2e-21
sp|Q9QZ81|I2C2_RAT  Eukaryotic translation initiation factor...    96   2e-19
sp|Q9SJK3|AGOL_ARATH  Argonaute-like protein At2g27880             96   2e-19
sp|Q8CJF9|I2C3_MOUSE  Eukaryotic translation initiation fact...    95   3e-19
sp|O77503|I2C2_RABIT  Eukaryotic translation initiation fact...    95   3e-19
sp|Q9UKV8|I2C2_HUMAN  Eukaryotic translation initiation fact...    95   3e-19
sp|Q8CJG1|I2C1_MOUSE  Eukaryotic translation initiation fact...    95   3e-19

>sp|Q8UVX0|PIWI_BRARE Piwi protein
          Length = 858

 Score =  180 bits (457), Expect = 5e-45
 Identities = 109/297 (36%), Positives = 168/297 (56%), Gaps = 6/297 (2%)
 Frame = +2

Query: 32   TQCVTQRNGSNRDDRRRKTVADKSVMQMFSKLGYDPWGISLKMAPTMIVGIDTFH-SKTG 208
            +QCV  R  S    +   TVA K  +QM  K+G + W + + +   MIVGID +H +  G
Sbjct: 580  SQCVVSRTISK--PQALMTVATKIALQMNCKMGGELWSVEIPLRQLMIVGIDCYHDTAAG 637

Query: 209  KRSVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQKFGTMPHRFIIY 388
            KRS+ A V S++   S++ S         E  + L  +   A+ A+ +   ++P R I+Y
Sbjct: 638  KRSIGAMVASLNQGMSRWFSKCVLQNRGQEIIDALKGSLQGALKAYLKYNNSLPSRIIVY 697

Query: 389  RDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVVKKRISVKFFK--DG--ANP 556
            RDGVGD  L     +E   +M+ ++ + ++   P++  VVVKKRIS +FF   DG  ANP
Sbjct: 698  RDGVGDGMLQSVVDYEVPQIMQSIKTMGQDYE-PKLSVVVVKKRISSRFFARIDGKIANP 756

Query: 557  NPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYCNKKTNEVSPMAPSVLQ 736
             PGTV+D ++ +P +Y+F++VSQ    G  +PT+YNV+ D           S + P  +Q
Sbjct: 757  PPGTVIDTEVTRPEWYDFFIVSQAVRFGCVAPTHYNVVFDN----------SGLKPDHMQ 806

Query: 737  QITYSLTHLYFNWMGTIRVPVPVHYADRLAELVG-IVHRGTAPPTINERIRERLFYL 904
            ++TY L H+Y+NW G +RVP P  YA +LA LVG  +H+    P +N  + + L+YL
Sbjct: 807  RLTYKLCHMYYNWQGIVRVPAPCQYAHKLAFLVGQSIHK---EPNMN--LDDFLYYL 858

>sp|Q9VKM1|PIWI_DROME Piwi protein
          Length = 843

 Score =  168 bits (425), Expect = 2e-41
 Identities = 103/294 (35%), Positives = 153/294 (52%), Gaps = 4/294 (1%)
 Frame = +2

Query: 32   TQCVTQRNGSNRDDRRRKTVADKSVMQMFSKLGYDPWGISLKMAPTMIVGIDTFHS-KTG 208
            TQ VT +   NR      ++A K  +Q+  KLGY PW I L ++  M +G D   S +  
Sbjct: 566  TQVVTLKTTKNRS---LMSIATKIAIQLNCKLGYTPWMIELPLSGLMTIGFDIAKSTRDR 622

Query: 209  KRSVQASVFSIS-SKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQKFGTMPHRFII 385
            KR+  A + S+   + S Y S V      +     L      A+  +Q +   +P R + 
Sbjct: 623  KRAYGALIASMDLQQNSTYFSTVTECSAFDVLANTLWPMIAKALRQYQHEHRKLPSRIVF 682

Query: 386  YRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNL--PQIIYVVVKKRISVKFFKDGANPN 559
            YRDGV    L    +FE   +++ ++  Y    L  PQ+ Y+VV + ++ +FF +G NP 
Sbjct: 683  YRDGVSSGSLKQLFEFEVKDIIEKLKTEYARVQLSPPQLAYIVVTRSMNTRFFLNGQNPP 742

Query: 560  PGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYCNKKTNEVSPMAPSVLQQ 739
            PGT+VD+ I  P  Y+FYLVSQ+  +GT SPT+YNVL  +            ++P  +Q+
Sbjct: 743  PGTIVDDVITLPERYDFYLVSQQVRQGTVSPTSYNVLYSS----------MGLSPEKMQK 792

Query: 740  ITYSLTHLYFNWMGTIRVPVPVHYADRLAELVGIVHRGTAPPTINERIRERLFY 901
            +TY + HLY+NW GT RVP    YA +LA LV     GT   +I +   E+ FY
Sbjct: 793  LTYKMCHLYYNWSGTTRVPAVCQYAKKLATLV-----GTNLHSIPQNALEKKFY 841

>sp|Q9VUQ5|AGO2_DROME Argonaute 2 protein
          Length = 1214

 Score =  102 bits (254), Expect = 2e-21
 Identities = 84/299 (28%), Positives = 134/299 (44%), Gaps = 21/299 (7%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADKSVMQMFSKLGYDPWGISLK---------MAPTMI 175
            G+LTQC+ Q     + + +        ++++ SKL     GI+ K         M  TM 
Sbjct: 909  GILTQCIKQFTVERKCNNQ---TIGNILLKINSKLN----GINHKIKDDPRLPMMKNTMY 961

Query: 176  VGIDTFHSKTGKRSVQASVFSISSKFSQYMSFVNSP----KGKNEFHENLGKNFLTAITA 343
            +G D  H    +R +  SV  +++    Y +  N      +G  E  E++    L  +  
Sbjct: 962  IGADVTHPSPDQREIP-SVVGVAASHDPYGASYNMQYRLQRGALEEIEDMFSITLEHLRV 1020

Query: 344  FQQKFGTMPHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVVKKRI 523
            +++     P   I YRDGV D Q    K  E   + +  +K+      P+I  V+V KR 
Sbjct: 1021 YKEYRNAYPDHIIYYRDGVSDGQFPKIKNEELRCIKQACDKVGCK---PKICCVIVVKRH 1077

Query: 524  SVKFFKDGA--------NPNPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDT 679
              +FF  G         N +PGTVVD  IV PN  +F++VS +  +GTA PT YNV+ +T
Sbjct: 1078 HTRFFPSGDVTTSNKFNNVDPGTVVDRTIVHPNEMQFFMVSHQAIQGTAKPTRYNVIENT 1137

Query: 680  KYCNKKTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLAELVGIVHRGT 856
                        +   +LQQ+TY+L H++     ++  P P + A  +A    +   GT
Sbjct: 1138 ----------GNLDIDLLQQLTYNLCHMFPRCNRSVSYPAPAYLAHLVAARGRVYLTGT 1186

>sp|P34681|YO43_CAEEL Hypothetical protein ZK757.3 in chromosome III
          Length = 1040

 Score =  102 bits (253), Expect = 2e-21
 Identities = 86/293 (29%), Positives = 126/293 (43%), Gaps = 25/293 (8%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADKSVMQMFSKLGYDPWGISLKMA------------P 166
            G+++QCV  +N S    R         V+++  K+G    GI+ ++             P
Sbjct: 685  GIMSQCVLMKNVS----RPTPATCANIVLKLNMKMG----GINSRIVADKITNKYLVDQP 736

Query: 167  TMIVGIDTFHSKTGKR-----SVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLT 331
            TM+VGID  H    +      SV A V ++      Y + V   K   E    L      
Sbjct: 737  TMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKKCRESVVYLLDAIRE 796

Query: 332  AITAFQQKFGTMPHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVV 511
             I  F +     P R I+YRDGV + Q     + E  ++      I E+   P I Y+VV
Sbjct: 797  RIITFYRHTKQKPARIIVYRDGVSEGQFSEVLREEIQSIRTACLAIAEDFR-PPITYIVV 855

Query: 512  KKRISVKFF--------KDGANPNPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNV 667
            +KR   + F            N  PGT VD  IV P  ++FYL S    +GT+ P  Y+V
Sbjct: 856  QKRHHARIFCKYQNDMVGKAKNVPPGTTVDTGIVSPEGFDFYLCSHYGVQGTSRPARYHV 915

Query: 668  LMDTKYCNKKTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLA 826
            L+D   C    +E+        Q ITY + H Y     ++ +P PV+YAD +A
Sbjct: 916  LLDE--CKFTADEI--------QSITYGMCHTYGRCTRSVSIPTPVYYADLVA 958

>sp|Q9QZ81|I2C2_RAT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Golgi ER protein 95 kDa) (GERp95)
          Length = 860

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 78/286 (27%), Positives = 122/286 (42%), Gaps = 18/286 (6%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADK------SVMQMFSKLGYDPWGISLKMAPTMIVGI 184
            G+ TQCV  +N      +    +  K       V  +    G  P    +   P + +G 
Sbjct: 542  GMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPP----VFQQPVIFLGA 597

Query: 185  DTFHSKTG---KRSVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQK 355
            D  H   G   K S+ A V S+ +  ++Y + V   + + E  ++L       +  F + 
Sbjct: 598  DVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKS 657

Query: 356  FGTMPHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVVKKRISVKF 535
                P R I YRDGV + Q       E  A+ +   K+ E +  P I ++VV+KR   + 
Sbjct: 658  TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL-EKEYQPGITFIVVQKRHHTRL 716

Query: 536  F---------KDGANPNPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYC 688
            F         K G  P  GT VD KI  P  ++FYL S    +GT+ P++Y+VL D    
Sbjct: 717  FCTDKNERVGKSGNIP-AGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD--- 772

Query: 689  NKKTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLA 826
                   +  +   LQ +TY L H Y     ++ +P P +YA  +A
Sbjct: 773  -------NRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVA 811

>sp|Q9SJK3|AGOL_ARATH Argonaute-like protein At2g27880
          Length = 997

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 27/244 (11%)
 Frame = +2

Query: 164  PTMIVGIDTFHSKTGKRSVQASVFSISS----KFSQYMSFVNSPKGKNEFHENLGKNFLT 331
            PT+I+G D  H + G+ S  +    ++S    + ++Y   V++   + E  ++L K    
Sbjct: 714  PTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQD 773

Query: 332  A-------------ITAFQQKFGTMPHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIY 472
                            AF++  G +P R I YRDGV + Q       E  A+ K    + 
Sbjct: 774  PQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQ 833

Query: 473  ENQNLPQIIYVVVKKRISVKFFKD----------GANPNPGTVVDEKIVKPNFYEFYLVS 622
            EN  +P++ +V+V+KR   + F +            N  PGTVVD KI  PN ++FYL S
Sbjct: 834  ENY-VPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNS 892

Query: 623  QRTTKGTASPTNYNVLMDTKYCNKKTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVP 802
                +GT+ P +Y+VL+D           +      LQ +T +L + Y     ++ +  P
Sbjct: 893  HAGIQGTSRPAHYHVLLDE----------NGFTADQLQMLTNNLCYTYARCTKSVSIVPP 942

Query: 803  VHYA 814
             +YA
Sbjct: 943  AYYA 946

>sp|Q8CJF9|I2C3_MOUSE Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
            (Argonaute-3) (Piwi/argonaute family protein meIF2C3)
          Length = 860

 Score = 95.1 bits (235), Expect = 3e-19
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 16/284 (5%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADKSVMQM--FSKLGYDPWGISLKMAPTMIVGIDTFH 196
            G+ TQCV  +N      +    +  K  +++   + +       S+   P + +G D  H
Sbjct: 542  GMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTH 601

Query: 197  SKTG---KRSVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQKFGTM 367
               G   K S+ A V S+ +  S+Y + V   + + E  ++L       +  F +     
Sbjct: 602  PPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFK 661

Query: 368  PHRFIIYRDGVGDSQLYLTKKFETDAVMKM---VEKIYENQNLPQIIYVVVKKRISVKFF 538
            P R I YRDGV + Q      +E  A+ +    +EK Y+    P I Y+VV+KR   + F
Sbjct: 662  PTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQ----PGITYIVVQKRHHTRLF 717

Query: 539  ------KDGANPN--PGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYCNK 694
                  + G + N   GT VD  I  P  ++FYL S    +GT+ P++Y+VL D  +   
Sbjct: 718  CADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNF--- 774

Query: 695  KTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLA 826
                        LQ +TY L H Y     ++ +P P +YA  +A
Sbjct: 775  -------FTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVA 811

>sp|O77503|I2C2_RABIT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2)
          Length = 840

 Score = 95.1 bits (235), Expect = 3e-19
 Identities = 78/286 (27%), Positives = 121/286 (42%), Gaps = 18/286 (6%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADK------SVMQMFSKLGYDPWGISLKMAPTMIVGI 184
            G+ TQCV  +N      +    +  K       V  +    G  P    +   P + +G 
Sbjct: 522  GMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPP----VFQQPVIFLGA 577

Query: 185  DTFHSKTG---KRSVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQK 355
            D  H   G   K S+ A V S+ +  ++Y + V   + + E  ++L       +  F + 
Sbjct: 578  DVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKS 637

Query: 356  FGTMPHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVVKKRISVKF 535
                P R I YRDGV + Q       E  A+ +   K+ E    P I ++VV+KR   + 
Sbjct: 638  TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL-EKDYQPGITFIVVQKRHHTRL 696

Query: 536  F---------KDGANPNPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYC 688
            F         K G  P  GT VD KI  P  ++FYL S    +GT+ P++Y+VL D    
Sbjct: 697  FCTDKNERVGKSGNIP-AGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD--- 752

Query: 689  NKKTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLA 826
                   +  +   LQ +TY L H Y     ++ +P P +YA  +A
Sbjct: 753  -------NRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVA 791

>sp|Q9UKV8|I2C2_HUMAN Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Slicer protein) (PAZ Piwi domain protein)
            (PPD)
          Length = 851

 Score = 95.1 bits (235), Expect = 3e-19
 Identities = 78/286 (27%), Positives = 121/286 (42%), Gaps = 18/286 (6%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADK------SVMQMFSKLGYDPWGISLKMAPTMIVGI 184
            G+ TQCV  +N      +    +  K       V  +    G  P    +   P + +G 
Sbjct: 533  GMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPP----VFQQPVIFLGA 588

Query: 185  DTFHSKTG---KRSVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQK 355
            D  H   G   K S+ A V S+ +  ++Y + V   + + E  ++L       +  F + 
Sbjct: 589  DVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKS 648

Query: 356  FGTMPHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVVKKRISVKF 535
                P R I YRDGV + Q       E  A+ +   K+ E    P I ++VV+KR   + 
Sbjct: 649  TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL-EKDYQPGITFIVVQKRHHTRL 707

Query: 536  F---------KDGANPNPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYC 688
            F         K G  P  GT VD KI  P  ++FYL S    +GT+ P++Y+VL D    
Sbjct: 708  FCTDKNERVGKSGNIP-AGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD--- 763

Query: 689  NKKTNEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLA 826
                   +  +   LQ +TY L H Y     ++ +P P +YA  +A
Sbjct: 764  -------NRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVA 802

>sp|Q8CJG1|I2C1_MOUSE Eukaryotic translation initiation factor 2C 1 (eIF2C 1) (eIF-2C 1)
            (Argonaute-1) (Piwi/argonaute family protein meIF2C1)
          Length = 857

 Score = 94.7 bits (234), Expect = 3e-19
 Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 14/282 (4%)
 Frame = +2

Query: 23   GLLTQCVTQRNGSNRDDRRRKTVADKSVMQM--FSKLGYDPWGISLKMAPTMIVGIDTFH 196
            G+ TQCV  +N      +    +  K  +++   + +       ++   P + +G D  H
Sbjct: 539  GMATQCVQVKNAVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTH 598

Query: 197  SKTG---KRSVQASVFSISSKFSQYMSFVNSPKGKNEFHENLGKNFLTAITAFQQKFGTM 367
               G   K S+ A V S+ +  S+Y + V   + + E  E+L       +  F +     
Sbjct: 599  PPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFK 658

Query: 368  PHRFIIYRDGVGDSQLYLTKKFETDAVMKMVEKIYENQNLPQIIYVVVKKRISVKFF--- 538
            P R I YRDGV + QL     +E  A+     K+ E    P I Y+VV+KR   + F   
Sbjct: 659  PTRIIFYRDGVPEGQLPQILHYELLAIRDACIKL-EKDYQPGITYIVVQKRHHTRLFCAD 717

Query: 539  ------KDGANPNPGTVVDEKIVKPNFYEFYLVSQRTTKGTASPTNYNVLMDTKYCNKKT 700
                  K G  P  GT VD  I  P  ++FYL S    +GT+ P++Y VL D    N+ T
Sbjct: 718  KNERIGKSGNIP-AGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDD---NRFT 773

Query: 701  NEVSPMAPSVLQQITYSLTHLYFNWMGTIRVPVPVHYADRLA 826
             +        LQ +TY L H Y     ++ +P P +YA  +A
Sbjct: 774  AD-------ELQILTYQLCHTYVRCTRSVSIPAPAYYARLVA 808

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,471,304
Number of Sequences: 369166
Number of extensions: 2537624
Number of successful extensions: 5418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5383
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10287619925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00933

  1. Dr_sW_023_J07
  2. Dr_sW_006_K18
  3. Dr_sW_007_E15
  4. Dr_sW_023_M05