Planaria EST Database

DrC_00932

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00932
         (844 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41042|RS4_DROME  40S ribosomal protein S4                     379   e-105
sp|P47836|RS4_CHICK  40S ribosomal protein S4                     370   e-102
sp|O62738|RS4X_MONDO  40S ribosomal protein S4, X isoform         370   e-102
sp|P62705|RS4X_FELCA  40S ribosomal protein S4, X isoform >g...   368   e-101
sp|O62739|RS4Y1_MONDO  40S ribosomal protein S4, Y isoform 1      368   e-101
sp|P47961|RS4_CRIGR  40S ribosomal protein S4                     368   e-101
sp|P22090|RS4Y1_HUMAN  40S ribosomal protein S4, Y isoform 1      366   e-101
sp|Q861U8|RS4Y1_GORGO  40S ribosomal protein S4, Y isoform 1      365   e-101
sp|Q861V0|RS4Y1_PANPA  40S ribosomal protein S4, Y isoform 1...   364   e-100
sp|Q6GVM7|RS4Y2_PANTR  40S ribosomal protein S4, Y isoform 2      363   e-100

>sp|P41042|RS4_DROME 40S ribosomal protein S4
          Length = 261

 Score =  379 bits (972), Expect = e-105
 Identities = 176/259 (67%), Positives = 217/259 (83%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKRL APK+W LDK+GG +AP+P +GPHK RE+LPL + LRNRLKYAL  +E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K++MQ+ VK+D KVRTD  +P G+MDV+++EKTGEFFRL+YD KGRF +HRI  +E+K
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+VKK  +    +P+L THDGRTIRYPDPLI +ND++QVD+++ KI +Y+KF++GNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C ITGG N GRVG V+NRERH G  DIVHI+DSQG  FATRLTNVFIIGK NKP+ISLPK
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPK 240

Query: 744 GAGLRLSIAEERDRRLEAK 800
           G G++LSIAEERD+RL AK
Sbjct: 241 GKGVKLSIAEERDKRLAAK 259

>sp|P47836|RS4_CHICK 40S ribosomal protein S4
          Length = 263

 Score =  370 bits (950), Expect = e-102
 Identities = 170/260 (65%), Positives = 211/260 (81%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVRTD  +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI  +E+K
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDPLIK NDTIQ+D+   KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C +TGG N GR+G++ NRERH G  D+VH++D+ G  FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL+IAEERD+RL AK+
Sbjct: 241 GKGIRLTIAEERDKRLAAKQ 260

>sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform
          Length = 263

 Score =  370 bits (950), Expect = e-102
 Identities = 170/262 (64%), Positives = 212/262 (80%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVRTD  +PVGFMDV+SIEKTGE FRL+YDTKGRF +HRI  +E+K
Sbjct: 61  VKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K  V    IP+L THD RTIRYPDPLIK NDTIQ+D+   KI +++KF+TGN+
Sbjct: 121 YKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNM 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C +TGG N GR+G++ NRE+H G  D+VH++D+ G  FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKKLN 809
           G G+RL+IAEERD+RL AK+ N
Sbjct: 241 GKGIRLTIAEERDKRLAAKQNN 262

>sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform
 sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform
 sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform
 sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform
 sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform
 sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform
 sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform (Single copy abundant mRNA
           protein) (SCR10)
          Length = 263

 Score =  368 bits (944), Expect = e-101
 Identities = 170/260 (65%), Positives = 211/260 (81%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVRTD  +P GFMDV+SI+KTGE FRLIYDTKGRF +HRI  +E+K
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDPLIK NDTIQ+D+   KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C +TGG N GR+G++ NRERH G  D+VH++D+ G  FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL+IAEERD+RL AK+
Sbjct: 241 GKGIRLTIAEERDKRLAAKQ 260

>sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1
          Length = 263

 Score =  368 bits (944), Expect = e-101
 Identities = 167/260 (64%), Positives = 211/260 (81%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVRTD  +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI  +E+K
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDPLIK NDT+Q+++   KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C +TGG N GR+G++ NRE+H G  D+VH++D+ G  FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL+IAEERD+RL AK+
Sbjct: 241 GKGIRLTIAEERDKRLAAKQ 260

>sp|P47961|RS4_CRIGR 40S ribosomal protein S4
          Length = 263

 Score =  368 bits (944), Expect = e-101
 Identities = 170/260 (65%), Positives = 211/260 (81%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVRTD  +P GFMDV+SI+KTGE FRLIYDTKGRF +HRI  +E+K
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDPLIK NDTIQ+D+   KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C +TGG N GR+G++ NRERH G  D+VH++D+ G  FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL+IAEERD+RL AK+
Sbjct: 241 GKGIRLTIAEERDKRLAAKQ 260

>sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1
          Length = 263

 Score =  366 bits (940), Expect = e-101
 Identities = 167/260 (64%), Positives = 209/260 (80%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVR D  +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDP+IK NDT+Q+D+   KIIN++KF+TGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C + GG N GRVG++ NRERH G  D+VH++D+ G  FATRL+N+F+IG  NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL++AEERD+RL  K+
Sbjct: 241 GKGIRLTVAEERDKRLATKQ 260

>sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1
          Length = 263

 Score =  365 bits (938), Expect = e-101
 Identities = 166/260 (63%), Positives = 209/260 (80%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVR D  +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDP+IK NDT+Q+D+   KIIN++KF+TGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C + GG N GRVG++ NRERH G  D+VH++D+ G  FATR++N+F+IG  NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL++AEERD+RL  K+
Sbjct: 241 GKGIRLTVAEERDKRLATKQ 260

>sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1
 sp|Q861U9|RS4Y1_PANTR 40S ribosomal protein S4, Y isoform 1
          Length = 263

 Score =  364 bits (934), Expect = e-100
 Identities = 166/260 (63%), Positives = 208/260 (80%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVR D  +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDP+IK NDT+Q+D+   KIIN++KF+TGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C + GG N GRVG++ NRERH G  D+VH++D+ G  FATRL+N+F+IG  NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL++A ERD+RL  K+
Sbjct: 241 GKGIRLTVAAERDKRLATKQ 260

>sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2
          Length = 263

 Score =  363 bits (933), Expect = e-100
 Identities = 167/260 (64%), Positives = 209/260 (80%)
 Frame = +3

Query: 24  MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
           MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT  E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
           V K+ MQ+ +KID KVR D  +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61  VKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
           YKLC+V+K+ V    IP+L THD RTIRYPDPLIK NDT+Q+D+   KI +++KF+TGN+
Sbjct: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180

Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
           C + GG N GRVG+V NRERH G  D+VH++D+ G  FATR++N+F+IG  NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240

Query: 744 GAGLRLSIAEERDRRLEAKK 803
           G G+RL+IAEERD+RL AK+
Sbjct: 241 GKGIRLTIAEERDKRLAAKQ 260

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,317,285
Number of Sequences: 369166
Number of extensions: 1847348
Number of successful extensions: 4849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4815
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00932

  1. Dr_sW_019_M08
  2. Dr_sW_023_I22
  3. Dr_sW_012_C01