Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_C01
(419 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41042|RS4_DROME 40S ribosomal protein S4 195 3e-50
sp|P47836|RS4_CHICK 40S ribosomal protein S4 191 7e-49
sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform >g... 191 7e-49
sp|P47961|RS4_CRIGR 40S ribosomal protein S4 191 7e-49
sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform 190 9e-49
sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 187 8e-48
sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1 187 8e-48
sp|Q861U7|RS4Y1_PONPY 40S ribosomal protein S4, Y isoform 1 187 1e-47
sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1 186 1e-47
sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 185 3e-47
>sp|P41042|RS4_DROME 40S ribosomal protein S4
Length = 261
Score = 195 bits (496), Expect = 3e-50
Identities = 90/124 (72%), Positives = 108/124 (87%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
+P+L THDGRTIRYPDPLI +ND++QVD+++ KI +Y+KF++GNLC ITGG N GRVG V
Sbjct: 136 VPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
+NRERH G DIVHI+DSQG FATRLTNVFIIGK NKP+ISLPKG G++LSIAEERD+R
Sbjct: 196 VNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
Query: 364 LEAK 375
L AK
Sbjct: 256 LAAK 259
>sp|P47836|RS4_CHICK 40S ribosomal protein S4
Length = 263
Score = 191 bits (484), Expect = 7e-49
Identities = 82/125 (65%), Positives = 105/125 (84%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGNLC +TGG N GR+G++
Sbjct: 136 IPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+G G+RL+IAEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
Query: 364 LEAKK 378
L AK+
Sbjct: 256 LAAKQ 260
>sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform
sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform
sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform
sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform
sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform
sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform
sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform (Single copy abundant mRNA
protein) (SCR10)
Length = 263
Score = 191 bits (484), Expect = 7e-49
Identities = 82/125 (65%), Positives = 105/125 (84%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGNLC +TGG N GR+G++
Sbjct: 136 IPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+G G+RL+IAEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
Query: 364 LEAKK 378
L AK+
Sbjct: 256 LAAKQ 260
>sp|P47961|RS4_CRIGR 40S ribosomal protein S4
Length = 263
Score = 191 bits (484), Expect = 7e-49
Identities = 82/125 (65%), Positives = 105/125 (84%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGNLC +TGG N GR+G++
Sbjct: 136 IPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+G G+RL+IAEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
Query: 364 LEAKK 378
L AK+
Sbjct: 256 LAAKQ 260
>sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform
Length = 263
Score = 190 bits (483), Expect = 9e-49
Identities = 81/127 (63%), Positives = 106/127 (83%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGN+C +TGG N GR+G++
Sbjct: 136 IPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRE+H G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+G G+RL+IAEERD+R
Sbjct: 196 TNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
Query: 364 LEAKKLN 384
L AK+ N
Sbjct: 256 LAAKQNN 262
>sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 187 bits (475), Expect = 8e-48
Identities = 79/125 (63%), Positives = 103/125 (82%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN++KF+TGNLC + GG N GRVG++
Sbjct: 136 IPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++D+ G FATRL+N+F+IG NKPWISLP+G G+RL++AEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
Query: 364 LEAKK 378
L K+
Sbjct: 256 LATKQ 260
>sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 187 bits (475), Expect = 8e-48
Identities = 79/125 (63%), Positives = 105/125 (84%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDPLIK NDT+Q+++ KI +++KF+TGNLC +TGG N GR+G++
Sbjct: 136 IPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRE+H G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+G G+RL+IAEERD+R
Sbjct: 196 TNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
Query: 364 LEAKK 378
L AK+
Sbjct: 256 LAAKQ 260
>sp|Q861U7|RS4Y1_PONPY 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 187 bits (474), Expect = 1e-47
Identities = 79/125 (63%), Positives = 103/125 (82%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDPLIK NDT+Q+D+ KIIN++KF+TGN+C + GG N GRVG++
Sbjct: 136 IPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++D+ G FATR++N+F+IG NKPWISLP+G G+RL+IAEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
Query: 364 LEAKK 378
L K+
Sbjct: 256 LATKQ 260
>sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 186 bits (473), Expect = 1e-47
Identities = 78/125 (62%), Positives = 103/125 (82%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN++KF+TGNLC + GG N GRVG++
Sbjct: 136 IPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++D+ G FATR++N+F+IG NKPWISLP+G G+RL++AEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
Query: 364 LEAKK 378
L K+
Sbjct: 256 LATKQ 260
>sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4
Length = 263
Score = 185 bits (470), Expect = 3e-47
Identities = 77/125 (61%), Positives = 104/125 (83%)
Frame = +1
Query: 4 IPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNLCFITGGHNQGRVGIV 183
IP+L THD RTIRYPDP+IK+NDT+++D+ KI ++KF+TGNLC +TGG N GR+G++
Sbjct: 136 IPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVI 195
Query: 184 MNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPKGAGLRLSIAEERDRR 363
NRERH G D+VH++DS G FATRL+N+F+IGK NK W+S+P+G G+RL+IAEERD+R
Sbjct: 196 TNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255
Query: 364 LEAKK 378
L AK+
Sbjct: 256 LAAKQ 260
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,483,432
Number of Sequences: 369166
Number of extensions: 819048
Number of successful extensions: 2140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)