Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_I22
(842 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41042|RS4_DROME 40S ribosomal protein S4 368 e-101
sp|P47836|RS4_CHICK 40S ribosomal protein S4 358 8e-99
sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform 357 2e-98
sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform >g... 356 4e-98
sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1 356 4e-98
sp|P47961|RS4_CRIGR 40S ribosomal protein S4 356 4e-98
sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 355 1e-97
sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1... 355 1e-97
sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1 354 2e-97
sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2 352 7e-97
>sp|P41042|RS4_DROME 40S ribosomal protein S4
Length = 261
Score = 368 bits (945), Expect = e-101
Identities = 172/261 (65%), Positives = 216/261 (82%), Gaps = 1/261 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKRL APK+W LDK+GG +AP+P +GPHK RE+LPL + LRNRLKYAL +E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K++MQ+ VK+D KVRTD +P G+MDV+++EKTGEFFRL+YD KGRF +HRI +E+K
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+VKK + +P+L THDGRTIRYPDPLI +ND++QVD+++ KI +Y+KF++GNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C ITGG N GRVG V+NRERH G DIVHI+DSQG FATRLTNVFIIGK NKP+ISLPK
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPK 240
Query: 744 GAGLRLSIA-EKETEIAAKNY 803
G G++LSIA E++ +AAK +
Sbjct: 241 GKGVKLSIAEERDKRLAAKTH 261
>sp|P47836|RS4_CHICK 40S ribosomal protein S4
Length = 263
Score = 358 bits (920), Expect = 8e-99
Identities = 166/259 (64%), Positives = 208/259 (80%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVRTD +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI +E+K
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C +TGG N GR+G++ NRERH G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL+IA E++ +AAK
Sbjct: 241 GKGIRLTIAEERDKRLAAK 259
>sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform
Length = 263
Score = 357 bits (917), Expect = 2e-98
Identities = 165/259 (63%), Positives = 208/259 (80%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVRTD +PVGFMDV+SIEKTGE FRL+YDTKGRF +HRI +E+K
Sbjct: 61 VKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGN+
Sbjct: 121 YKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNM 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C +TGG N GR+G++ NRE+H G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL+IA E++ +AAK
Sbjct: 241 GKGIRLTIAEERDKRLAAK 259
>sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform
sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform
sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform
sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform
sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform
sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform
sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform (Single copy abundant mRNA
protein) (SCR10)
Length = 263
Score = 356 bits (914), Expect = 4e-98
Identities = 166/259 (64%), Positives = 208/259 (80%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVRTD +P GFMDV+SI+KTGE FRLIYDTKGRF +HRI +E+K
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C +TGG N GR+G++ NRERH G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL+IA E++ +AAK
Sbjct: 241 GKGIRLTIAEERDKRLAAK 259
>sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 356 bits (914), Expect = 4e-98
Identities = 163/259 (62%), Positives = 208/259 (80%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVRTD +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI +E+K
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDPLIK NDT+Q+++ KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C +TGG N GR+G++ NRE+H G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL+IA E++ +AAK
Sbjct: 241 GKGIRLTIAEERDKRLAAK 259
>sp|P47961|RS4_CRIGR 40S ribosomal protein S4
Length = 263
Score = 356 bits (914), Expect = 4e-98
Identities = 166/259 (64%), Positives = 208/259 (80%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVRTD +P GFMDV+SI+KTGE FRLIYDTKGRF +HRI +E+K
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +++KF+TGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C +TGG N GR+G++ NRERH G D+VH++D+ G FATRL+N+F+IGK NKPWISLP+
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL+IA E++ +AAK
Sbjct: 241 GKGIRLTIAEERDKRLAAK 259
>sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 355 bits (910), Expect = 1e-97
Identities = 163/259 (62%), Positives = 206/259 (79%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN++KF+TGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C + GG N GRVG++ NRERH G D+VH++D+ G FATRL+N+F+IG NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL++A E++ +A K
Sbjct: 241 GKGIRLTVAEERDKRLATK 259
>sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1
sp|Q861U9|RS4Y1_PANTR 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 355 bits (910), Expect = 1e-97
Identities = 163/259 (62%), Positives = 206/259 (79%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN++KF+TGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C + GG N GRVG++ NRERH G D+VH++D+ G FATRL+N+F+IG NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240
Query: 744 GAGLRLSI-AEKETEIAAK 797
G G+RL++ AE++ +A K
Sbjct: 241 GKGIRLTVAAERDKRLATK 259
>sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 354 bits (908), Expect = 2e-97
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN++KF+TGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C + GG N GRVG++ NRERH G D+VH++D+ G FATR++N+F+IG NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL++A E++ +A K
Sbjct: 241 GKGIRLTVAEERDKRLATK 259
>sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2
Length = 263
Score = 352 bits (903), Expect = 7e-97
Identities = 163/259 (62%), Positives = 206/259 (79%), Gaps = 1/259 (0%)
Frame = +3
Query: 24 MARGFKKHLKRLTAPKSWCLDKMGGNYAPKPRSGPHKQREALPLSLILRNRLKYALTYSE 203
MARG KKHLKR+ APK W LDK+ G +AP+P +GPHK RE LPL + LRNRLKYALT E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 204 VPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFLHRIHVDESK 383
V K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +HRI V+E+K
Sbjct: 61 VKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
Query: 384 YKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIINYVKFETGNL 563
YKLC+V+K+ V IP+L THD RTIRYPDPLIK NDT+Q+D+ KI +++KF+TGN+
Sbjct: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180
Query: 564 CFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKSNKPWISLPK 743
C + GG N GRVG+V NRERH G D+VH++D+ G FATR++N+F+IG NKPWISLP+
Sbjct: 181 CMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240
Query: 744 GAGLRLSIA-EKETEIAAK 797
G G+RL+IA E++ +AAK
Sbjct: 241 GKGIRLTIAEERDKRLAAK 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,760,048
Number of Sequences: 369166
Number of extensions: 1853186
Number of successful extensions: 4941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4907
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)