Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M08
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41042|RS4_DROME 40S ribosomal protein S4 266 3e-71
sp|P47836|RS4_CHICK 40S ribosomal protein S4 263 2e-70
sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform 262 4e-70
sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 262 5e-70
sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1... 262 5e-70
sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform >g... 261 8e-70
sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1 261 8e-70
sp|P47961|RS4_CRIGR 40S ribosomal protein S4 261 8e-70
sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1 261 8e-70
sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2 257 1e-68
>sp|P41042|RS4_DROME 40S ribosomal protein S4
Length = 261
Score = 266 bits (680), Expect = 3e-71
Identities = 121/184 (65%), Positives = 152/184 (82%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYAL +EV K++MQ+ VK+D KVRTD +P G+MDV+++EKTGEFFRL+YD KGRF +
Sbjct: 52 LKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVI 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI +E+KYKLC+VKK + +P+L THDGRTIRYPDPLI +ND++QVD+++ KI +
Sbjct: 112 HRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITD 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
Y+KF++GNLC ITGG N GRVG V+NRERH G DIVHI+DSQG FATRLTNVFIIGK
Sbjct: 172 YIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKG 231
Query: 543 NKPW 554
NKP+
Sbjct: 232 NKPY 235
>sp|P47836|RS4_CHICK 40S ribosomal protein S4
Length = 263
Score = 263 bits (673), Expect = 2e-70
Identities = 118/184 (64%), Positives = 148/184 (80%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVRTD +P GFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI +E+KYKLC+V+K+ V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +
Sbjct: 112 HRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITD 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC +TGG N GR+G++ NRERH G D+VH++D+ G FATRL+N+F+IGK
Sbjct: 172 FIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform
Length = 263
Score = 262 bits (670), Expect = 4e-70
Identities = 117/184 (63%), Positives = 148/184 (80%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVRTD +PVGFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI +E+KYKLC+V+K V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +
Sbjct: 112 HRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITD 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGN+C +TGG N GR+G++ NRE+H G D+VH++D+ G FATRL+N+F+IGK
Sbjct: 172 FIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 262 bits (669), Expect = 5e-70
Identities = 117/184 (63%), Positives = 147/184 (79%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI V+E+KYKLC+V+K+ V IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN
Sbjct: 112 HRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIIN 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC + GG N GRVG++ NRERH G D+VH++D+ G FATRL+N+F+IG
Sbjct: 172 FIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1
sp|Q861U9|RS4Y1_PANTR 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 262 bits (669), Expect = 5e-70
Identities = 117/184 (63%), Positives = 147/184 (79%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI V+E+KYKLC+V+K+ V IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN
Sbjct: 112 HRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIIN 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC + GG N GRVG++ NRERH G D+VH++D+ G FATRL+N+F+IG
Sbjct: 172 FIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform
sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform
sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform
sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform
sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform
sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform
sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform (Single copy abundant mRNA
protein) (SCR10)
Length = 263
Score = 261 bits (667), Expect = 8e-70
Identities = 118/184 (64%), Positives = 148/184 (80%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVRTD +P GFMDV+SI+KTGE FRLIYDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI +E+KYKLC+V+K+ V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +
Sbjct: 112 HRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITD 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC +TGG N GR+G++ NRERH G D+VH++D+ G FATRL+N+F+IGK
Sbjct: 172 FIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 261 bits (667), Expect = 8e-70
Identities = 115/184 (62%), Positives = 148/184 (80%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVRTD +P GFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI +E+KYKLC+V+K+ V IP+L THD RTIRYPDPLIK NDT+Q+++ KI +
Sbjct: 112 HRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITD 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC +TGG N GR+G++ NRE+H G D+VH++D+ G FATRL+N+F+IGK
Sbjct: 172 FIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|P47961|RS4_CRIGR 40S ribosomal protein S4
Length = 263
Score = 261 bits (667), Expect = 8e-70
Identities = 118/184 (64%), Positives = 148/184 (80%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVRTD +P GFMDV+SI+KTGE FRLIYDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI +E+KYKLC+V+K+ V IP+L THD RTIRYPDPLIK NDTIQ+D+ KI +
Sbjct: 112 HRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITD 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC +TGG N GR+G++ NRERH G D+VH++D+ G FATRL+N+F+IGK
Sbjct: 172 FIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1
Length = 263
Score = 261 bits (667), Expect = 8e-70
Identities = 116/184 (63%), Positives = 147/184 (79%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI V+E+KYKLC+V+K+ V IP+L THD RTIRYPDP+IK NDT+Q+D+ KIIN
Sbjct: 112 HRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIIN 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGNLC + GG N GRVG++ NRERH G D+VH++D+ G FATR++N+F+IG
Sbjct: 172 FIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
>sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2
Length = 263
Score = 257 bits (657), Expect = 1e-68
Identities = 115/184 (62%), Positives = 146/184 (79%)
Frame = +3
Query: 3 LKYALTYSEVPKVLMQKCVKIDNKVRTDKKFPVGFMDVVSIEKTGEFFRLIYDTKGRFFL 182
LKYALT EV K+ MQ+ +KID KVR D +P GFMDV+SIEKTGE FRL+YDTKGRF +
Sbjct: 52 LKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 111
Query: 183 HRIHVDESKYKLCRVKKLGVLPGNIPYLTTHDGRTIRYPDPLIKSNDTIQVDVSNDKIIN 362
HRI V+E+KYKLC+V+K+ V IP+L THD RTIRYPDPLIK NDT+Q+D+ KI +
Sbjct: 112 HRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITS 171
Query: 363 YVKFETGNLCFITGGHNQGRVGIVMNRERHIGGIDIVHIRDSQGQQFATRLTNVFIIGKS 542
++KF+TGN+C + GG N GRVG+V NRERH G D+VH++D+ G FATR++N+F+IG
Sbjct: 172 FIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNG 231
Query: 543 NKPW 554
NKPW
Sbjct: 232 NKPW 235
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,090,465
Number of Sequences: 369166
Number of extensions: 1184754
Number of successful extensions: 3298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3274
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)