Planaria EST Database

DrC_00928

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00928
         (832 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07848|VE1_HPV65  Replication protein E1                        40   0.010
sp|Q07846|VE1_HPV04  Replication protein E1                        33   0.96 
sp|P30518|V2R_HUMAN  Vasopressin V2 receptor (Renal-type arg...    32   2.8  
sp|P08964|MYO1_YEAST  Myosin-1 (Type II myosin)                    31   3.7  
sp|Q6FU50|LHS1_CANGA  Heat shock protein 70 homolog LHS1 pre...    31   3.7  
sp|P06760|BGLR_RAT  Beta-glucuronidase precursor                   30   6.2  
sp|O62479|SAS6_CAEEL  Spindle assembly abnormal protein 6          30   8.2  

>sp|Q07848|VE1_HPV65 Replication protein E1
          Length = 598

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 28/96 (29%), Positives = 43/96 (44%)
 Frame = +1

Query: 265 NKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLI 444
           N DL GS   ++  AE TD          S D +  +  E  S V       ++D+    
Sbjct: 8   NFDLEGSSWYIVHEAECTD----------SIDTLEDLCDESDSNVSNLIDDDVVDQ---- 53

Query: 445 GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 552
           GN+L  +++KI   CDN +AH+  KY     + + E
Sbjct: 54  GNSLALYNAKITDDCDNAIAHLKRKYNKSPEQAVAE 89

>sp|Q07846|VE1_HPV04 Replication protein E1
          Length = 599

 Score = 33.1 bits (74), Expect = 0.96
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +1

Query: 265 NKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLI 444
           N DL G+   ++  AE TD          S D +  +  E     D      L+D+ D++
Sbjct: 8   NFDLEGNNWYIVHEAECTD----------SIDTLDDLCDESN---DDSNISNLIDD-DVV 53

Query: 445 --GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 552
             GN+L  ++++I+  CDN +AH+  KY     + + E
Sbjct: 54  DQGNSLALYNAQINEDCDNALAHLKRKYNKSPEQAVAE 91

>sp|P30518|V2R_HUMAN Vasopressin V2 receptor (Renal-type arginine vasopressin receptor)
           (Antidiuretic hormone receptor) (AVPR V2)
          Length = 371

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 796 CAEPRISASFCVSNSPDSQGLIYCSKNAFPPSFGLLTKLC 677
           C  P I ASF  S S + + L+ C++   PPS G   + C
Sbjct: 319 CTNPWIYASFSSSVSSELRSLLCCARGRTPPSLGPQDESC 358

>sp|P08964|MYO1_YEAST Myosin-1 (Type II myosin)
          Length = 1928

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
 Frame = +1

Query: 73   RRLLGKTLTELIDHLDLIKDNENDVEMINYLQNNIGFLGLA---LHEKFDLLLSKLEVSI 243
            +++L   L  L + L  ++D     + IN L+  +     A   L ++F  L  KLE S 
Sbjct: 1562 KKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETST 1621

Query: 244  NDGNVKLNKDLIGSISELISSAERTDESSPVPHKTFSEDAIA----QILQEYQSL 396
            ND   K++ DL+  +       E  +           +DAI+    ++ Q+Y++L
Sbjct: 1622 NDSEAKIS-DLLKQLDHYTKVVEMLNN---------EKDAISLAEKELYQKYEAL 1666

>sp|Q6FU50|LHS1_CANGA Heat shock protein 70 homolog LHS1 precursor
          Length = 889

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 124 IKDNENDVEMINYLQNNIGFLGLALHEKFDLLLSKLEVS----INDGNVKLNKDLIGSIS 291
           + D EN  E  N +       GL + EK++ +LSK+  S     ++ N+K    LI  ++
Sbjct: 700 LADLENKAEKFNVI-------GLNVTEKYNSILSKMSFSSIRRSSEENIKTLAGLIDEVN 752

Query: 292 ELISSAERTDES 327
           E I S    DES
Sbjct: 753 ESIKSKAIDDES 764

>sp|P06760|BGLR_RAT Beta-glucuronidase precursor
          Length = 648

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 13  PYLRPNGF---DDHFDLFK--DCHRRRLLGKTLTELIDHLDLIKDNENDVEMINY 162
           P + P G+   D  FD F     HR  +L  T T  ID + +  D + DV ++NY
Sbjct: 191 PSMYPKGYFVQDISFDFFNYAGLHRSVVLYTTPTTYIDDITVTTDVDRDVGLVNY 245

>sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6
          Length = 492

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 355 EDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 507
           ED +A + Q+ +SL  + +     +E +++GN L     K+D+L    VAH
Sbjct: 253 EDEVADLKQDTESLQKQLEENQ--EELEIVGNMLREEQGKVDQLQKRNVAH 301

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,224,008
Number of Sequences: 369166
Number of extensions: 1761492
Number of successful extensions: 5168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5168
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00928

  1. Dr_sW_023_H09
  2. Dr_sW_027_G18
  3. Dr_sW_007_D13
  4. Dr_sW_002_E10