Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_D13
(745 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07848|VE1_HPV65 Replication protein E1 40 0.009
sp|Q07846|VE1_HPV04 Replication protein E1 33 0.80
sp|P30518|V2R_HUMAN Vasopressin V2 receptor (Renal-type arg... 32 2.3
sp|Q6FU50|LHS1_CANGA Heat shock protein 70 homolog LHS1 pre... 31 3.1
sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6 30 6.8
sp|P17256|KIME_RAT Mevalonate kinase (MK) 30 8.9
sp|Q9PRB5|Y030_UREPA Hypothetical protein UU030 30 8.9
>sp|Q07848|VE1_HPV65 Replication protein E1
Length = 598
Score = 39.7 bits (91), Expect = 0.009
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = +1
Query: 178 NKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLI 357
N DL GS ++ AE TD S D + + E S V ++D+
Sbjct: 8 NFDLEGSSWYIVHEAECTD----------SIDTLEDLCDESDSNVSNLIDDDVVDQ---- 53
Query: 358 GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 465
GN+L +++KI CDN +AH+ KY + + E
Sbjct: 54 GNSLALYNAKITDDCDNAIAHLKRKYNKSPEQAVAE 89
>sp|Q07846|VE1_HPV04 Replication protein E1
Length = 599
Score = 33.1 bits (74), Expect = 0.80
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 178 NKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLI 357
N DL G+ ++ AE TD S D + + E D L+D+ D++
Sbjct: 8 NFDLEGNNWYIVHEAECTD----------SIDTLDDLCDESN---DDSNISNLIDD-DVV 53
Query: 358 --GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 465
GN+L ++++I+ CDN +AH+ KY + + E
Sbjct: 54 DQGNSLALYNAQINEDCDNALAHLKRKYNKSPEQAVAE 91
>sp|P30518|V2R_HUMAN Vasopressin V2 receptor (Renal-type arginine vasopressin receptor)
(Antidiuretic hormone receptor) (AVPR V2)
Length = 371
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 709 CAEPRISASFCVSNSPDSQGLIYCSKNAFPPSFGLLTKLC 590
C P I ASF S S + + L+ C++ PPS G + C
Sbjct: 319 CTNPWIYASFSSSVSSELRSLLCCARGRTPPSLGPQDESC 358
>sp|Q6FU50|LHS1_CANGA Heat shock protein 70 homolog LHS1 precursor
Length = 889
Score = 31.2 bits (69), Expect = 3.1
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 37 IKDNENDVEMINYLQNNIGFLGLALHEKFDLLLSKLEVS----INDGNVKLNKDLIGSIS 204
+ D EN E N + GL + EK++ +LSK+ S ++ N+K LI ++
Sbjct: 700 LADLENKAEKFNVI-------GLNVTEKYNSILSKMSFSSIRRSSEENIKTLAGLIDEVN 752
Query: 205 ELISSAERTDES 240
E I S DES
Sbjct: 753 ESIKSKAIDDES 764
>sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6
Length = 492
Score = 30.0 bits (66), Expect = 6.8
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 268 EDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 420
ED +A + Q+ +SL + + +E +++GN L K+D+L VAH
Sbjct: 253 EDEVADLKQDTESLQKQLEENQ--EELEIVGNMLREEQGKVDQLQKRNVAH 301
>sp|P17256|KIME_RAT Mevalonate kinase (MK)
Length = 395
Score = 29.6 bits (65), Expect = 8.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 256 KTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 420
+ E A A + ++Y L + L+D N NALG H+ +D+LC AH
Sbjct: 277 RVLGEMAAAPVPEQYLVLEE------LMDMNQHHLNALGVGHASLDQLCQVTAAH 325
>sp|Q9PRB5|Y030_UREPA Hypothetical protein UU030
Length = 747
Score = 29.6 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = +1
Query: 25 HLDLIKDNE------NDVEMINYLQNNIGFLGLALHEKFD 126
+L + KDN N E INYL+NN GF+ ++E D
Sbjct: 416 NLAISKDNRMKSRWFNKQEYINYLENNAGFISSNIYEDKD 455
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,020,385
Number of Sequences: 369166
Number of extensions: 1537842
Number of successful extensions: 4514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4514
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)