Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_H09
(558 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07848|VE1_HPV65 Replication protein E1 40 0.005
sp|Q07846|VE1_HPV04 Replication protein E1 33 0.48
sp|P08964|MYO1_YEAST Myosin-1 (Type II myosin) 31 1.8
sp|Q6FU50|LHS1_CANGA Heat shock protein 70 homolog LHS1 pre... 31 1.8
sp|P06760|BGLR_RAT Beta-glucuronidase precursor 30 3.1
sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6 30 4.0
sp|P35978|KINH_STRPU Kinesin heavy chain 30 5.3
sp|P17256|KIME_RAT Mevalonate kinase (MK) 30 5.3
sp|Q9PRB5|Y030_UREPA Hypothetical protein UU030 30 5.3
sp|P31235|CASQ2_RABIT Calsequestrin-2 precursor (Calsequest... 29 6.9
>sp|Q07848|VE1_HPV65 Replication protein E1
Length = 598
Score = 39.7 bits (91), Expect = 0.005
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = +1
Query: 265 NKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLI 444
N DL GS ++ AE TD S D + + E S V ++D+
Sbjct: 8 NFDLEGSSWYIVHEAECTD----------SIDTLEDLCDESDSNVSNLIDDDVVDQ---- 53
Query: 445 GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 552
GN+L +++KI CDN +AH+ KY + + E
Sbjct: 54 GNSLALYNAKITDDCDNAIAHLKRKYNKSPEQAVAE 89
>sp|Q07846|VE1_HPV04 Replication protein E1
Length = 599
Score = 33.1 bits (74), Expect = 0.48
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 265 NKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLI 444
N DL G+ ++ AE TD S D + + E D L+D+ D++
Sbjct: 8 NFDLEGNNWYIVHEAECTD----------SIDTLDDLCDESN---DDSNISNLIDD-DVV 53
Query: 445 --GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 552
GN+L ++++I+ CDN +AH+ KY + + E
Sbjct: 54 DQGNSLALYNAQINEDCDNALAHLKRKYNKSPEQAVAE 91
>sp|P08964|MYO1_YEAST Myosin-1 (Type II myosin)
Length = 1928
Score = 31.2 bits (69), Expect = 1.8
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Frame = +1
Query: 73 RRLLGKTLTELIDHLDLIKDNENDVEMINYLQNNIGFLGLA---LHEKFDLLLSKLEVSI 243
+++L L L + L ++D + IN L+ + A L ++F L KLE S
Sbjct: 1562 KKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETST 1621
Query: 244 NDGNVKLNKDLIGSISELISSAERTDESSPVPHKTFSEDAIA----QILQEYQSL 396
ND K++ DL+ + E + +DAI+ ++ Q+Y++L
Sbjct: 1622 NDSEAKIS-DLLKQLDHYTKVVEMLNN---------EKDAISLAEKELYQKYEAL 1666
>sp|Q6FU50|LHS1_CANGA Heat shock protein 70 homolog LHS1 precursor
Length = 889
Score = 31.2 bits (69), Expect = 1.8
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 124 IKDNENDVEMINYLQNNIGFLGLALHEKFDLLLSKLEVS----INDGNVKLNKDLIGSIS 291
+ D EN E N + GL + EK++ +LSK+ S ++ N+K LI ++
Sbjct: 700 LADLENKAEKFNVI-------GLNVTEKYNSILSKMSFSSIRRSSEENIKTLAGLIDEVN 752
Query: 292 ELISSAERTDES 327
E I S DES
Sbjct: 753 ESIKSKAIDDES 764
>sp|P06760|BGLR_RAT Beta-glucuronidase precursor
Length = 648
Score = 30.4 bits (67), Expect = 3.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 13 PYLRPNGF---DDHFDLFK--DCHRRRLLGKTLTELIDHLDLIKDNENDVEMINY 162
P + P G+ D FD F HR +L T T ID + + D + DV ++NY
Sbjct: 191 PSMYPKGYFVQDISFDFFNYAGLHRSVVLYTTPTTYIDDITVTTDVDRDVGLVNY 245
>sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6
Length = 492
Score = 30.0 bits (66), Expect = 4.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 355 EDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 507
ED +A + Q+ +SL + + +E +++GN L K+D+L VAH
Sbjct: 253 EDEVADLKQDTESLQKQLEENQ--EELEIVGNMLREEQGKVDQLQKRNVAH 301
>sp|P35978|KINH_STRPU Kinesin heavy chain
Length = 1031
Score = 29.6 bits (65), Expect = 5.3
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Frame = +1
Query: 67 HRRRLLGKTLTELIDHLDLIKDNENDVEMINYLQNNIGFL----GLALHEKFDLLLSKLE 234
++ RL K ++++ +L+ + D E+ LQ+ +G L A E ++L + E
Sbjct: 428 NQSRLTEKLKQQMLEQEELLSSMQRDYEL---LQSQMGRLEAENAAAKEEAKEVLQALEE 484
Query: 235 VSINDGNVKLNKDLIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQS 414
+++N + ++E +S E +E H T +E Q L+++Q
Sbjct: 485 MAVNYDEKSKEVEDKNRMNETLS--EEVNEKMTALHTTSTELQKLQELEQHQRRRITEMM 542
Query: 415 KGLLDENDLIGNALG 459
LL + IG ALG
Sbjct: 543 ASLLKDLGEIGTALG 557
>sp|P17256|KIME_RAT Mevalonate kinase (MK)
Length = 395
Score = 29.6 bits (65), Expect = 5.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 343 KTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 507
+ E A A + ++Y L + L+D N NALG H+ +D+LC AH
Sbjct: 277 RVLGEMAAAPVPEQYLVLEE------LMDMNQHHLNALGVGHASLDQLCQVTAAH 325
>sp|Q9PRB5|Y030_UREPA Hypothetical protein UU030
Length = 747
Score = 29.6 bits (65), Expect = 5.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = +1
Query: 112 HLDLIKDNE------NDVEMINYLQNNIGFLGLALHEKFD 213
+L + KDN N E INYL+NN GF+ ++E D
Sbjct: 416 NLAISKDNRMKSRWFNKQEYINYLENNAGFISSNIYEDKD 455
>sp|P31235|CASQ2_RABIT Calsequestrin-2 precursor (Calsequestrin, cardiac muscle isoform)
Length = 409
Score = 29.3 bits (64), Expect = 6.9
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 319 DESSPVPHKTFSEDAIAQILQEYQ-SLVDRFQSKGLLD--ENDLIGNALGFFHSKID 480
DE +P+P+K ++E+ + + ++E+Q + R + + + + E+DL G + F K D
Sbjct: 222 DEPTPIPNKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVPFAEKSD 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.139 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,212,096
Number of Sequences: 369166
Number of extensions: 1171700
Number of successful extensions: 3942
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3942
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)