Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_G18
(432 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07848|VE1_HPV65 Replication protein E1 37 0.018
sp|Q07846|VE1_HPV04 Replication protein E1 32 0.75
sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6 30 2.2
sp|P17256|KIME_RAT Mevalonate kinase (MK) 30 2.8
sp|P31235|CASQ2_RABIT Calsequestrin-2 precursor (Calsequest... 29 3.7
sp|P18918|PLF3_MOUSE Proliferin 3 precursor (Mitogen-regula... 29 3.7
sp|P04768|PLF2_MOUSE Proliferin 2 precursor (Mitogen-regula... 29 3.7
sp|P42588|OAT_ECOLI Probable ornithine aminotransferase (Or... 29 3.7
sp|P38248|ECM33_YEAST Extracellular matrix protein 33 precu... 29 4.8
sp|P03169|VIE1_HCMVT 55 kDa immediate-early protein 1 (IE1) 29 4.8
>sp|Q07848|VE1_HPV65 Replication protein E1
Length = 598
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = +1
Query: 136 NWELQIGSISELISSAERTDESSPVPHKTFSEDAIAQILQEYQSLVDRFQSKGLLDENDL 315
N++L+ GS ++ AE TD S D + + E S V ++D+
Sbjct: 8 NFDLE-GSSWYIVHEAECTD----------SIDTLEDLCDESDSNVSNLIDDDVVDQ--- 53
Query: 316 IGNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 426
GN+L +++KI CDN +AH+ KY + + E
Sbjct: 54 -GNSLALYNAKITDDCDNAIAHLKRKYNKSPEQAVAE 89
>sp|Q07846|VE1_HPV04 Replication protein E1
Length = 599
Score = 31.6 bits (70), Expect = 0.75
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 298 LDENDLI--GNALGFFHSKIDRLCDNEVAHVAGKYEDFNSKRIEE 426
L ++D++ GN+L ++++I+ CDN +AH+ KY + + E
Sbjct: 47 LIDDDVVDQGNSLALYNAQINEDCDNALAHLKRKYNKSPEQAVAE 91
>sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6
Length = 492
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 229 EDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 381
ED +A + Q+ +SL + + +E +++GN L K+D+L VAH
Sbjct: 253 EDEVADLKQDTESLQKQLEENQ--EELEIVGNMLREEQGKVDQLQKRNVAH 301
>sp|P17256|KIME_RAT Mevalonate kinase (MK)
Length = 395
Score = 29.6 bits (65), Expect = 2.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 217 KTFSEDAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGFFHSKIDRLCDNEVAH 381
+ E A A + ++Y L + L+D N NALG H+ +D+LC AH
Sbjct: 277 RVLGEMAAAPVPEQYLVLEE------LMDMNQHHLNALGVGHASLDQLCQVTAAH 325
>sp|P31235|CASQ2_RABIT Calsequestrin-2 precursor (Calsequestrin, cardiac muscle isoform)
Length = 409
Score = 29.3 bits (64), Expect = 3.7
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 193 DESSPVPHKTFSEDAIAQILQEYQ-SLVDRFQSKGLLD--ENDLIGNALGFFHSKID 354
DE +P+P+K ++E+ + + ++E+Q + R + + + + E+DL G + F K D
Sbjct: 222 DEPTPIPNKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVPFAEKSD 278
>sp|P18918|PLF3_MOUSE Proliferin 3 precursor (Mitogen-regulated protein 3)
Length = 224
Score = 29.3 bits (64), Expect = 3.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 407 LKSSYLPATWATSLSQRRSILLWKNPNAFPIKSFSSSNPF 288
L SS P +W L S LLWKN +FP+ + + F
Sbjct: 2 LPSSIQPCSWILLLLLVNSSLLWKNVASFPMCAMRNGRCF 41
>sp|P04768|PLF2_MOUSE Proliferin 2 precursor (Mitogen-regulated protein 2)
Length = 224
Score = 29.3 bits (64), Expect = 3.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 407 LKSSYLPATWATSLSQRRSILLWKNPNAFPIKSFSSSNPF 288
L SS P +W L S LLWKN +FP+ + + F
Sbjct: 2 LPSSIQPCSWILLLLLVNSSLLWKNVASFPMCAMRNGRCF 41
>sp|P42588|OAT_ECOLI Probable ornithine aminotransferase (Ornithine--oxo-acid
aminotransferase)
Length = 429
Score = 29.3 bits (64), Expect = 3.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 232 DAIAQILQEYQSLVDRFQSKGLLDENDLIGNALGF-FHSKIDRLCDNEVAHVAGKYEDFN 408
D Q+ +EY LV + KG+L + + N +G+ F S++ R + VAG +
Sbjct: 338 DGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFR----QRVLVAGTLNNAK 393
Query: 409 SKRIE 423
+ RIE
Sbjct: 394 TIRIE 398
>sp|P38248|ECM33_YEAST Extracellular matrix protein 33 precursor
Length = 469
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 55 SNFDSNKSNFSCNA 14
+NFDS+ SNFSCNA
Sbjct: 321 ANFDSSSSNFSCNA 334
>sp|P03169|VIE1_HCMVT 55 kDa immediate-early protein 1 (IE1)
Length = 491
Score = 28.9 bits (63), Expect = 4.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 115 KQINSTKSLFNLTFPSLIETSNFDSNKSNFSCNANPRK 2
K++NS SL + FP L E S + CN NP K
Sbjct: 42 KEVNSQLSLGDPLFPELAEESLKTFERVTEDCNENPEK 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,960,171
Number of Sequences: 369166
Number of extensions: 910200
Number of successful extensions: 2699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2698
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)