Planaria EST Database

DrC_00908

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00908
         (612 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8T6A5|TBA1_APLCA  Tubulin alpha-1 chain                       304   1e-82
sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   301   7e-82
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                       301   9e-82
sp|Q94572|TBA3_HOMAM  Tubulin alpha-3 chain (Alpha-III tubulin)   301   1e-81
sp|P09645|TBA8_CHICK  Tubulin alpha-8 chain                       300   3e-81
sp|P36220|TBA_TORMA  Tubulin alpha chain (Alpha T6)               299   3e-81
sp|P68369|TBA1_MOUSE  Tubulin alpha-1 chain (Alpha-tubulin 1...   299   3e-81
sp|P68361|TBA1_CRIGR  Tubulin alpha-1 chain (Alpha-tubulin 1...   299   3e-81
sp|P02552|TBA1_CHICK  Tubulin alpha-1 chain                       299   3e-81
sp|Q25008|TBA1_HOMAM  Tubulin alpha-1 chain (Alpha-I tubulin)     299   3e-81

>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
          Length = 451

 Score =  304 bits (779), Expect = 1e-82
 Identities = 144/180 (80%), Positives = 156/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQ+VKCDPR+GKYMACCMLYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS D    D+ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVDAEGEDEGEEY 451

>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  301 bits (772), Expect = 7e-82
 Identities = 145/180 (80%), Positives = 158/180 (87%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACCMLYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS + A A++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVE-AEAEEGEEY 450

>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score =  301 bits (771), Expect = 9e-82
 Identities = 144/181 (79%), Positives = 158/181 (87%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQL+V EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQD-DE 539
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSAD    +++ DE
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSADAEGEEEEGDE 451

Query: 540 Y 542
           Y
Sbjct: 452 Y 452

>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
          Length = 451

 Score =  301 bits (770), Expect = 1e-81
 Identities = 142/180 (78%), Positives = 155/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPT VPGGDLA+V RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEEVG DSAD    ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGVDSADAEGEEEGEEY 451

>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
          Length = 324

 Score =  300 bits (767), Expect = 3e-81
 Identities = 143/180 (79%), Positives = 157/180 (87%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           Y+P++SAEKAYHEQLSV EIT ACF+P+NQMVKCDPR+GKYMACCMLYRGDVVPKDVN  
Sbjct: 147 YSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAA 206

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 207 IAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 266

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS D    D+ +EY
Sbjct: 267 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSMD--GEDEGEEY 324

>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
          Length = 451

 Score =  299 bits (766), Expect = 3e-81
 Identities = 141/180 (78%), Positives = 156/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS +    ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451

>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
           M-alpha-1)
 sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
 sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
 sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
          Length = 451

 Score =  299 bits (766), Expect = 3e-81
 Identities = 141/180 (78%), Positives = 156/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS +    ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451

>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
 sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
           K-alpha-1)
 sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
           M-alpha-2)
 sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
 sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 451

 Score =  299 bits (766), Expect = 3e-81
 Identities = 141/180 (78%), Positives = 156/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS +    ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451

>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
          Length = 412

 Score =  299 bits (766), Expect = 3e-81
 Identities = 141/180 (78%), Positives = 156/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 233 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 292

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 293 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 352

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS +    ++ +EY
Sbjct: 353 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 412

>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
          Length = 451

 Score =  299 bits (766), Expect = 3e-81
 Identities = 143/180 (79%), Positives = 155/180 (86%)
 Frame = +3

Query: 3   YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
           YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN  
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
                     QFVDWCPTGFKVGINYQPPTVVPG DLA+V RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARL 391

Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
           + KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEEVG DSAD  + +  DEY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGMDSADGEDIEGGDEY 451

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,733,840
Number of Sequences: 369166
Number of extensions: 1281767
Number of successful extensions: 3904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3718
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00908

  1. Dr_sW_022_N04
  2. Dr_sW_026_M10
  3. Dr_sW_010_E02