Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_M10
(382 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 182 2e-46
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 181 6e-46
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 179 2e-45
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 179 2e-45
sp|P08537|TBA_XENLA Tubulin alpha chain 178 3e-45
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 178 4e-45
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 177 5e-45
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 177 5e-45
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 177 5e-45
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 177 5e-45
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 182 bits (463), Expect = 2e-46
Identities = 87/104 (83%), Positives = 95/104 (91%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEAREDLAALEKDYEEVG DS D D+ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVDAEGEDEGEEY 451
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 181 bits (458), Expect = 6e-46
Identities = 88/105 (83%), Positives = 97/105 (92%), Gaps = 1/105 (0%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQD-DEY 312
YVGEGMEEGEFSEAREDLAALEKDYEEVG DSAD +++ DEY
Sbjct: 408 YVGEGMEEGEFSEAREDLAALEKDYEEVGVDSADAEGEEEEGDEY 452
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 179 bits (454), Expect = 2e-45
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPT VPGGDLA+V RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEF+EAREDLAALEKDYEEVG DSAD ++ +EY
Sbjct: 408 YVGEGMEEGEFTEAREDLAALEKDYEEVGVDSADAEGEEEGEEY 451
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 179 bits (453), Expect = 2e-45
Identities = 87/104 (83%), Positives = 97/104 (93%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEAREDLAALEKDYEEVG DS + A A++ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVE-AEAEEGEEY 450
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 178 bits (452), Expect = 3e-45
Identities = 87/104 (83%), Positives = 96/104 (92%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEARED+AALEKDYEEVG DSAD D+ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDMAALEKDYEEVGADSADA--EDEGEEY 449
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 178 bits (451), Expect = 4e-45
Identities = 86/104 (82%), Positives = 96/104 (92%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTA++EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEARED+AALEKDYEEVG DSAD D+ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDMAALEKDYEEVGADSAD--GEDEGEEY 449
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 177 bits (450), Expect = 5e-45
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 177 bits (450), Expect = 5e-45
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 177 bits (450), Expect = 5e-45
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 348 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 407
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 408 YVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 177 bits (450), Expect = 5e-45
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +1
Query: 1 PTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHW 180
PTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHW
Sbjct: 309 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 368
Query: 181 YVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 312
YVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 369 YVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 412
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,191,630
Number of Sequences: 369166
Number of extensions: 551302
Number of successful extensions: 2082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)