Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N04
(547 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 304 8e-83
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 301 5e-82
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 301 7e-82
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 301 9e-82
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 300 2e-81
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 299 3e-81
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 299 3e-81
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 299 3e-81
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 299 3e-81
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 299 3e-81
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 304 bits (779), Expect = 8e-83
Identities = 144/180 (80%), Positives = 156/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQ+VKCDPR+GKYMACCMLYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS D D+ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVDAEGEDEGEEY 451
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 301 bits (772), Expect = 5e-82
Identities = 145/180 (80%), Positives = 158/180 (87%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACCMLYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS + A A++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVE-AEAEEGEEY 450
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 301 bits (771), Expect = 7e-82
Identities = 144/181 (79%), Positives = 158/181 (87%), Gaps = 1/181 (0%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQL+V EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQD-DE 539
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSAD +++ DE
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSADAEGEEEEGDE 451
Query: 540 Y 542
Y
Sbjct: 452 Y 452
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 301 bits (770), Expect = 9e-82
Identities = 142/180 (78%), Positives = 155/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPT VPGGDLA+V RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEEVG DSAD ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGVDSADAEGEEEGEEY 451
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 300 bits (767), Expect = 2e-81
Identities = 143/180 (79%), Positives = 157/180 (87%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
Y+P++SAEKAYHEQLSV EIT ACF+P+NQMVKCDPR+GKYMACCMLYRGDVVPKDVN
Sbjct: 147 YSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAA 206
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 207 IAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 266
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS D D+ +EY
Sbjct: 267 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSMD--GEDEGEEY 324
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 299 bits (766), Expect = 3e-81
Identities = 141/180 (78%), Positives = 156/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 299 bits (766), Expect = 3e-81
Identities = 141/180 (78%), Positives = 156/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 299 bits (766), Expect = 3e-81
Identities = 141/180 (78%), Positives = 156/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 299 bits (766), Expect = 3e-81
Identities = 141/180 (78%), Positives = 156/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 233 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 292
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL
Sbjct: 293 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL 352
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 353 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 412
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 299 bits (766), Expect = 3e-81
Identities = 143/180 (79%), Positives = 155/180 (86%)
Frame = +3
Query: 3 YAPVVSAEKAYHEQLSVPEITTACFDPNNQMVKCDPRNGKYMACCMLYRGDVVPKDVNXX 182
YAPV+SAEKAYHEQLSV EIT ACF+P NQMVKCDPR+GKYMACC+LYRGDVVPKDVN
Sbjct: 272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331
Query: 183 XXXXXXXXXXQFVDWCPTGFKVGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRL 362
QFVDWCPTGFKVGINYQPPTVVPG DLA+V RA+CMLSNTTAI+EA+ RL
Sbjct: 332 IANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARL 391
Query: 363 NVKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 542
+ KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEEVG DSAD + + DEY
Sbjct: 392 DHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGMDSADGEDIEGGDEY 451
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,545,872
Number of Sequences: 369166
Number of extensions: 1178411
Number of successful extensions: 3712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3525
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)