Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_E02
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 171 4e-43
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 169 1e-42
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 168 4e-42
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 167 5e-42
sp|P08537|TBA_XENLA Tubulin alpha chain 167 7e-42
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 167 9e-42
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 166 1e-41
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 166 1e-41
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 166 1e-41
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 166 1e-41
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 171 bits (434), Expect = 4e-43
Identities = 82/99 (82%), Positives = 90/99 (90%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEAREDLAALEKDYEEVG DS D D+ +EY
Sbjct: 413 MEEGEFSEAREDLAALEKDYEEVGVDSVDAEGEDEGEEY 451
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 169 bits (429), Expect = 1e-42
Identities = 83/100 (83%), Positives = 92/100 (92%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQD-DEY 298
MEEGEFSEAREDLAALEKDYEEVG DSAD +++ DEY
Sbjct: 413 MEEGEFSEAREDLAALEKDYEEVGVDSADAEGEEEEGDEY 452
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 168 bits (425), Expect = 4e-42
Identities = 80/99 (80%), Positives = 89/99 (89%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPT VPGGDLA+V RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEF+EAREDLAALEKDYEEVG DSAD ++ +EY
Sbjct: 413 MEEGEFTEAREDLAALEKDYEEVGVDSADAEGEEEGEEY 451
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 167 bits (424), Expect = 5e-42
Identities = 82/99 (82%), Positives = 92/99 (92%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEAREDLAALEKDYEEVG DS + A A++ +EY
Sbjct: 413 MEEGEFSEAREDLAALEKDYEEVGVDSVE-AEAEEGEEY 450
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 167 bits (423), Expect = 7e-42
Identities = 82/99 (82%), Positives = 91/99 (91%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEARED+AALEKDYEEVG DSAD D+ +EY
Sbjct: 413 MEEGEFSEAREDMAALEKDYEEVGADSADA--EDEGEEY 449
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 167 bits (422), Expect = 9e-42
Identities = 81/99 (81%), Positives = 91/99 (91%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTA++EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEARED+AALEKDYEEVG DSAD D+ +EY
Sbjct: 413 MEEGEFSEAREDMAALEKDYEEVGADSAD--GEDEGEEY 449
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 166 bits (421), Expect = 1e-41
Identities = 79/99 (79%), Positives = 90/99 (90%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 413 MEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 166 bits (421), Expect = 1e-41
Identities = 79/99 (79%), Positives = 90/99 (90%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 413 MEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 166 bits (421), Expect = 1e-41
Identities = 79/99 (79%), Positives = 90/99 (90%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 413 MEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 166 bits (421), Expect = 1e-41
Identities = 79/99 (79%), Positives = 90/99 (90%)
Frame = +2
Query: 2 VGINYQPPTVVPGGDLAQVRRALCMLSNTTAISEAFTRLNVKFDLMYAKRAFVHWYVGEG 181
VGINYQPPTVVPGGDLA+V+RA+CMLSNTTAI+EA+ RL+ KFDLMYAKRAFVHWYVGEG
Sbjct: 314 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 373
Query: 182 MEEGEFSEAREDLAALEKDYEEVGYDSADVANADQDDEY 298
MEEGEFSEARED+AALEKDYEEVG DS + ++ +EY
Sbjct: 374 MEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 412
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,632,410
Number of Sequences: 369166
Number of extensions: 496520
Number of successful extensions: 1953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)