Planarian EST Database

DrC_00885

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00885 ACATAAAATAAACCATAGTTAAAATAGAAAAAACACTTGCCTGAACTAAAGAAACAAAAA CTTCATAACAAACAAAAAGGCAAAAAAAAACTCATTCTATGAATAAGCAAGAGAACAAAA AACTACCAGAAATCAAATGACACAACATATGACCAGCAGAAATATTAATCATTAAACGAA CAGAAAGAGTTAATAAACGAATTCAAAAACTCACTAATTCAATAAGAACTAAAAAAGGAC TTAATAATAAAGGACAACCTAAAGGGACAAAATCAACAATGTATTCAACAAAATCAAAAT AGCAACTAGTTAAAAAAACCATTATAACCACCATAGATCTAAAACAAAAGCAAACAAATA AATCAGAAGTAACACCAGCAAAATATGGAAACAAAGAAGAAAATTTTAAAAACATAACAC CCTTAAATAATAAAAAAGCATAAACAAAAAAACCAAAATGTTCACAACCTTTAAAAATTC ATAAATTATTATAAAAATAAGAAAACATAGAAAAAGAAGAAAAGTAAGAAAAATAACCAA ACACAAAATAAAAAGAAAAAATAAATAATATCAACCAATAAGGGTTACAATACCAAACAC CAGAATAAAATGAATCTTGTACCTCGTGCCGATTTGAAAGAAAAATCAACAGAATTGCTT CATAATCTAATTCAAAAATTAAGAGCTGCTTATGATAAAGGAGCAGACGCATTCGATAAA GTTATCAATGATCCAGATATTGCAGAAATCTTGAATCGTATGGATGCACTCACCAGACGA ATTGCTGAATCGATCATCAATAAATTCAAACAAATAATCAAAAAAATTGATGAAGCAAC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00885
         (839 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O47494|ATP6_METSE  ATP synthase a chain (ATPase protein 6)      89   1e-17
sp|Q92JP0|ATP6_RICCN  ATP synthase a chain (ATPase protein 6)      86   2e-16
sp|Q37385|ATP6_ACACA  ATP synthase a chain (ATPase protein 6)      84   4e-16
sp|P37212|ATP6_NEUCR  ATP synthase a chain precursor (ATPase...    80   5e-15
sp|Q9ZEC1|ATP6_RICPR  ATP synthase a chain (ATPase protein 6)      80   7e-15
sp|P15994|ATP6_PODAN  ATP synthase a chain (ATPase protein 6)      78   3e-14
sp|Q37708|ATP6_ARTSF  ATP synthase a chain (ATPase protein 6)      78   3e-14
sp|Q00275|ATP6_APILI  ATP synthase a chain (ATPase protein 6)      77   5e-14
sp|Q36918|ATP6_PENCH  ATP synthase a chain precursor (ATPase...    77   6e-14
sp|P05500|ATP6_OENBE  ATP synthase a chain (ATPase protein 6)      77   8e-14

>sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6)
          Length = 229

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 60/155 (38%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           +F + F LF  ++FL    LFPY   VT  + V       +VI V L   +     ++  
Sbjct: 68  YFPFVFTLFIFIVFLNILGLFPYVFTVTVHIVVTLGLSFSIVIGVTLGGLWKFKWNFLSI 127

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
            +P G PL L+P LVLIE VS+  R ++L VRL  N+SAGH+L  +++G F F+ L    
Sbjct: 128 LMPAGAPLALAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAG-FGFNMLTTAG 186

Query: 91  VFFCLFVCYEVFVSL-------VQASVFSILTMVY 8
           VF    V   VF+SL       +QA VFS+LT +Y
Sbjct: 187 VFNIFPVLIMVFISLLEAAVAVIQAYVFSLLTTIY 221

>sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6)
          Length = 242

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           F    F LF  ++F     + PY    TS + V F    +V +MV +       + ++  
Sbjct: 84  FIPLVFSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTL 143

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG---SFLFSCLF 101
           F+P G PL L+P +++IEL ++  R ++LS+RL  N+ AGH+L  +I+G   S +    F
Sbjct: 144 FLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKF 203

Query: 100 IE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
           +      + + +E+FV+++QA +F+IL+ +Y
Sbjct: 204 LPIPIMVILIGFEIFVAILQAYIFTILSCMY 234

>sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6)
          Length = 247

 Score = 84.3 bits (207), Expect = 4e-16
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           +F     +F  ++F     L PY   +T  +   F     +   + L + + +  E+   
Sbjct: 85  YFPLVLFVFSFILFANLIGLLPYGFTITGHIIFTFQIAFSLFFGITLINFFNNKTEFFNL 144

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCL---- 104
           FVP G P  L PFLV+IE+VS+ IR  +LSVRL  N+ AGH L +++S +F+F+      
Sbjct: 145 FVPSGVPKPLIPFLVVIEVVSYLIRPFSLSVRLFANMLAGHTLLNILS-AFIFNVFKKYA 203

Query: 103 ---FIE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
              F+  +F    +  E  +++VQA +FSILT +Y
Sbjct: 204 LISFLPLLFIVFIIVLEFCIAIVQAYIFSILTCIY 238

>sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase protein 6)
          Length = 252

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           +F + + LF  ++      + PY    TS   V F     +V+   +       +E+   
Sbjct: 88  YFPFIYTLFIFILINNLIGMVPYSFASTSHFVVTFALSFTIVLGATILGFQKHGLEFFSL 147

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
            VP GCPL L P LVLIE +S+  R ++L +RL  NI +GHML H+++G F ++ +    
Sbjct: 148 LVPAGCPLALLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG-FTYNIMTSGI 206

Query: 91  VFFCL----------FVCYEVFVSLVQASVFSILTMVY 8
           +FF L          F   E+ ++ +QA VF +LT  Y
Sbjct: 207 IFFFLGLIPLAFIIAFSGLELGIAFIQAQVFVVLTSGY 244

>sp|Q9ZEC1|ATP6_RICPR ATP synthase a chain (ATPase protein 6)
          Length = 242

 Score = 80.1 bits (196), Expect = 7e-15
 Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           F    F LF  ++F     + PY    TS + V F    ++ + V +       V ++  
Sbjct: 84  FIPLVFSLFIFILFCNLLGMTPYSFTATSHIIVTFTLALLIFLTVTIVGFIKHGVSFLTL 143

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG---SFLFSCLF 101
           F+P G P+ L+P +++IEL ++  R ++LS+RL  N+ AGH+L  +I+    S +    F
Sbjct: 144 FLPHGTPVWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIASFTVSLMIYLKF 203

Query: 100 IE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
           +      + + +E+F++++QA +F+IL+ +Y
Sbjct: 204 LPIPLMVILIGFEIFIAILQAYIFTILSCMY 234

>sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6)
          Length = 264

 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
 Frame = -2

Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
           F+YA  +F  ++      + PY    TS   + F     +V+   +       +E+    
Sbjct: 103 FIYALFIF--ILINNLIGMVPYSFASTSHFVLTFALSFTIVLGATILGFQKHGLEFFSLL 160

Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE*V 89
           VP GCPL L P LVLIE +S+  R ++L +RL  NI +GHML H+++G F ++ +    +
Sbjct: 161 VPAGCPLGLLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG-FTYNIMTSGII 219

Query: 88  FFCL----------FVCYEVFVSLVQASVFSILTMVY 8
           FF L          F   E+ ++ +QA VF +LT  Y
Sbjct: 220 FFFLGLIPLAFIIAFSGLELGIAFIQAQVFVVLTSGY 256

>sp|Q37708|ATP6_ARTSF ATP synthase a chain (ATPase protein 6)
          Length = 219

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
 Frame = -2

Query: 478 IFKGCEHFGFFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCY 299
           +  G   FG  +    LF  ++F  F  LFPY    TS L V       + I   L +  
Sbjct: 57  LLMGPASFGANILVIALFLFILFNNFIGLFPYIFTATSHLAVTLSLAVPLWISFILYTWI 116

Query: 298 FDFVEYIVDFVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSF 119
            +    +   VPLG P  L PF+VL+E++S  IR +TLSVRL  N+ AGH+L  L+    
Sbjct: 117 KETTNALAHLVPLGTPAPLMPFMVLMEIISNMIRPITLSVRLAANMIAGHLLLTLLGAQG 176

Query: 118 LFSCLFIE*VFF---CLFVCYEVFVSLVQASVFSILTMVY 8
               L++  +      + +  E  V+++Q+ VF  L  +Y
Sbjct: 177 TLENLYVTSIVVFSQIILLMLEFSVAIIQSYVFMTLMTLY 216

>sp|Q00275|ATP6_APILI ATP synthase a chain (ATPase protein 6)
          Length = 226

 Score = 77.4 bits (189), Expect = 5e-14
 Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
 Frame = -2

Query: 418 VMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDFVPLGCPLLLS 239
           +M     SL PY   +TS L +       +     +   Y +++ ++   VPL  P+ L 
Sbjct: 83  IMITNIFSLIPYVFTLTSHLLLNMILSLTLWFSFLIYLIYNNYIMFLSHLVPLNSPVFLM 142

Query: 238 PFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFL---FSCLFIE*VFFCLFVC 68
            F+V+IEL+S  IR  TLS+RL  N+ +GH++  L+ G F+    S L I  +   + + 
Sbjct: 143 NFMVIIELISLIIRPWTLSIRLSANLISGHLILTLL-GIFISNFISILPINLMIQNMLLT 201

Query: 67  YEVFVSLVQASVFSILTMVYF 5
            E+F+S++Q+ VFSIL ++YF
Sbjct: 202 LEIFMSMIQSYVFSILLILYF 222

>sp|Q36918|ATP6_PENCH ATP synthase a chain precursor (ATPase protein 6)
          Length = 257

 Score = 77.0 bits (188), Expect = 6e-14
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           FF   ++LF  ++      L PY    TS   + F     VV+   +       +++   
Sbjct: 93  FFPLMYVLFIFILVNNLIGLVPYSFASTSHFILTFSISFTVVLGATILGFQRHGLKFFSL 152

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
           FVP GCPL L P LVLIE +S+  R ++L +RL  NI +GHML  ++SG F ++ +    
Sbjct: 153 FVPSGCPLALLPLLVLIEFISYLSRNVSLGLRLAANILSGHMLLSILSG-FTYNIMTSGI 211

Query: 91  VFFCL----------FVCYEVFVSLVQASVFSILTMVY 8
           +FF L          F   E+ ++ +QA VF +L   Y
Sbjct: 212 IFFILGLIPLAFIIAFSGLELAIAFIQAQVFVVLACSY 249

>sp|P05500|ATP6_OENBE ATP synthase a chain (ATPase protein 6)
          Length = 281

 Score = 76.6 bits (187), Expect = 8e-14
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
 Frame = -2

Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
           FF    + F  ++F     + PY   VTS   +       + I + +     + + ++  
Sbjct: 116 FFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSF 175

Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
            +P G PL L+PFLVL+EL+S+  R L+L +RL  N+ AGH L  ++SG F ++ L +  
Sbjct: 176 LLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSG-FAWTMLCMND 234

Query: 91  VFFC------LFVC-----YEVFVSLVQASVFSILTMVY 8
           +F+       LF+       E+ V+++QA VF+IL  +Y
Sbjct: 235 LFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIY 273

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,139,246
Number of Sequences: 369166
Number of extensions: 852477
Number of successful extensions: 2731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2708
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00885

Planaria EST Database

DrC_00885

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail