Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O14
(839 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6) 89 1e-17
sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6) 86 2e-16
sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6) 84 4e-16
sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase... 80 5e-15
sp|Q9ZEC1|ATP6_RICPR ATP synthase a chain (ATPase protein 6) 80 7e-15
sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6) 78 3e-14
sp|Q37708|ATP6_ARTSF ATP synthase a chain (ATPase protein 6) 78 3e-14
sp|Q00275|ATP6_APILI ATP synthase a chain (ATPase protein 6) 77 5e-14
sp|Q36918|ATP6_PENCH ATP synthase a chain precursor (ATPase... 77 6e-14
sp|P05500|ATP6_OENBE ATP synthase a chain (ATPase protein 6) 77 8e-14
>sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 89.4 bits (220), Expect = 1e-17
Identities = 60/155 (38%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
+F + F LF ++FL LFPY VT + V +VI V L + ++
Sbjct: 68 YFPFVFTLFIFIVFLNILGLFPYVFTVTVHIVVTLGLSFSIVIGVTLGGLWKFKWNFLSI 127
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
+P G PL L+P LVLIE VS+ R ++L VRL N+SAGH+L +++G F F+ L
Sbjct: 128 LMPAGAPLALAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAG-FGFNMLTTAG 186
Query: 91 VFFCLFVCYEVFVSL-------VQASVFSILTMVY 8
VF V VF+SL +QA VFS+LT +Y
Sbjct: 187 VFNIFPVLIMVFISLLEAAVAVIQAYVFSLLTTIY 221
>sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6)
Length = 242
Score = 85.5 bits (210), Expect = 2e-16
Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
F F LF ++F + PY TS + V F +V +MV + + ++
Sbjct: 84 FIPLVFSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTL 143
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG---SFLFSCLF 101
F+P G PL L+P +++IEL ++ R ++LS+RL N+ AGH+L +I+G S + F
Sbjct: 144 FLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKF 203
Query: 100 IE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
+ + + +E+FV+++QA +F+IL+ +Y
Sbjct: 204 LPIPIMVILIGFEIFVAILQAYIFTILSCMY 234
>sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6)
Length = 247
Score = 84.3 bits (207), Expect = 4e-16
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
+F +F ++F L PY +T + F + + L + + + E+
Sbjct: 85 YFPLVLFVFSFILFANLIGLLPYGFTITGHIIFTFQIAFSLFFGITLINFFNNKTEFFNL 144
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCL---- 104
FVP G P L PFLV+IE+VS+ IR +LSVRL N+ AGH L +++S +F+F+
Sbjct: 145 FVPSGVPKPLIPFLVVIEVVSYLIRPFSLSVRLFANMLAGHTLLNILS-AFIFNVFKKYA 203
Query: 103 ---FIE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
F+ +F + E +++VQA +FSILT +Y
Sbjct: 204 LISFLPLLFIVFIIVLEFCIAIVQAYIFSILTCIY 238
>sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase protein 6)
Length = 252
Score = 80.5 bits (197), Expect = 5e-15
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
+F + + LF ++ + PY TS V F +V+ + +E+
Sbjct: 88 YFPFIYTLFIFILINNLIGMVPYSFASTSHFVVTFALSFTIVLGATILGFQKHGLEFFSL 147
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
VP GCPL L P LVLIE +S+ R ++L +RL NI +GHML H+++G F ++ +
Sbjct: 148 LVPAGCPLALLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG-FTYNIMTSGI 206
Query: 91 VFFCL----------FVCYEVFVSLVQASVFSILTMVY 8
+FF L F E+ ++ +QA VF +LT Y
Sbjct: 207 IFFFLGLIPLAFIIAFSGLELGIAFIQAQVFVVLTSGY 244
>sp|Q9ZEC1|ATP6_RICPR ATP synthase a chain (ATPase protein 6)
Length = 242
Score = 80.1 bits (196), Expect = 7e-15
Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
F F LF ++F + PY TS + V F ++ + V + V ++
Sbjct: 84 FIPLVFSLFIFILFCNLLGMTPYSFTATSHIIVTFTLALLIFLTVTIVGFIKHGVSFLTL 143
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG---SFLFSCLF 101
F+P G P+ L+P +++IEL ++ R ++LS+RL N+ AGH+L +I+ S + F
Sbjct: 144 FLPHGTPVWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIASFTVSLMIYLKF 203
Query: 100 IE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
+ + + +E+F++++QA +F+IL+ +Y
Sbjct: 204 LPIPLMVILIGFEIFIAILQAYIFTILSCMY 234
>sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6)
Length = 264
Score = 78.2 bits (191), Expect = 3e-14
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Frame = -2
Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
F+YA +F ++ + PY TS + F +V+ + +E+
Sbjct: 103 FIYALFIF--ILINNLIGMVPYSFASTSHFVLTFALSFTIVLGATILGFQKHGLEFFSLL 160
Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE*V 89
VP GCPL L P LVLIE +S+ R ++L +RL NI +GHML H+++G F ++ + +
Sbjct: 161 VPAGCPLGLLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG-FTYNIMTSGII 219
Query: 88 FFCL----------FVCYEVFVSLVQASVFSILTMVY 8
FF L F E+ ++ +QA VF +LT Y
Sbjct: 220 FFFLGLIPLAFIIAFSGLELGIAFIQAQVFVVLTSGY 256
>sp|Q37708|ATP6_ARTSF ATP synthase a chain (ATPase protein 6)
Length = 219
Score = 77.8 bits (190), Expect = 3e-14
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Frame = -2
Query: 478 IFKGCEHFGFFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCY 299
+ G FG + LF ++F F LFPY TS L V + I L +
Sbjct: 57 LLMGPASFGANILVIALFLFILFNNFIGLFPYIFTATSHLAVTLSLAVPLWISFILYTWI 116
Query: 298 FDFVEYIVDFVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSF 119
+ + VPLG P L PF+VL+E++S IR +TLSVRL N+ AGH+L L+
Sbjct: 117 KETTNALAHLVPLGTPAPLMPFMVLMEIISNMIRPITLSVRLAANMIAGHLLLTLLGAQG 176
Query: 118 LFSCLFIE*VFF---CLFVCYEVFVSLVQASVFSILTMVY 8
L++ + + + E V+++Q+ VF L +Y
Sbjct: 177 TLENLYVTSIVVFSQIILLMLEFSVAIIQSYVFMTLMTLY 216
>sp|Q00275|ATP6_APILI ATP synthase a chain (ATPase protein 6)
Length = 226
Score = 77.4 bits (189), Expect = 5e-14
Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Frame = -2
Query: 418 VMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDFVPLGCPLLLS 239
+M SL PY +TS L + + + Y +++ ++ VPL P+ L
Sbjct: 83 IMITNIFSLIPYVFTLTSHLLLNMILSLTLWFSFLIYLIYNNYIMFLSHLVPLNSPVFLM 142
Query: 238 PFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFL---FSCLFIE*VFFCLFVC 68
F+V+IEL+S IR TLS+RL N+ +GH++ L+ G F+ S L I + + +
Sbjct: 143 NFMVIIELISLIIRPWTLSIRLSANLISGHLILTLL-GIFISNFISILPINLMIQNMLLT 201
Query: 67 YEVFVSLVQASVFSILTMVYF 5
E+F+S++Q+ VFSIL ++YF
Sbjct: 202 LEIFMSMIQSYVFSILLILYF 222
>sp|Q36918|ATP6_PENCH ATP synthase a chain precursor (ATPase protein 6)
Length = 257
Score = 77.0 bits (188), Expect = 6e-14
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
FF ++LF ++ L PY TS + F VV+ + +++
Sbjct: 93 FFPLMYVLFIFILVNNLIGLVPYSFASTSHFILTFSISFTVVLGATILGFQRHGLKFFSL 152
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
FVP GCPL L P LVLIE +S+ R ++L +RL NI +GHML ++SG F ++ +
Sbjct: 153 FVPSGCPLALLPLLVLIEFISYLSRNVSLGLRLAANILSGHMLLSILSG-FTYNIMTSGI 211
Query: 91 VFFCL----------FVCYEVFVSLVQASVFSILTMVY 8
+FF L F E+ ++ +QA VF +L Y
Sbjct: 212 IFFILGLIPLAFIIAFSGLELAIAFIQAQVFVVLACSY 249
>sp|P05500|ATP6_OENBE ATP synthase a chain (ATPase protein 6)
Length = 281
Score = 76.6 bits (187), Expect = 8e-14
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Frame = -2
Query: 451 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
FF + F ++F + PY VTS + + I + + + + ++
Sbjct: 116 FFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSF 175
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE* 92
+P G PL L+PFLVL+EL+S+ R L+L +RL N+ AGH L ++SG F ++ L +
Sbjct: 176 LLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSG-FAWTMLCMND 234
Query: 91 VFFC------LFVC-----YEVFVSLVQASVFSILTMVY 8
+F+ LF+ E+ V+++QA VF+IL +Y
Sbjct: 235 LFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIY 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,139,246
Number of Sequences: 369166
Number of extensions: 852477
Number of successful extensions: 2731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2708
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)