Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_M01
(617 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00224|ATP6_MYTED ATP synthase a chain (ATPase protein 6) 74 4e-13
sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6) 74 4e-13
sp|Q37708|ATP6_ARTSF ATP synthase a chain (ATPase protein 6) 72 1e-12
sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase... 70 3e-12
sp|Q04654|ATP6_VICFA ATP synthase a chain (ATPase protein 6) 70 6e-12
sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6) 68 2e-11
sp|Q36918|ATP6_PENCH ATP synthase a chain precursor (ATPase... 68 2e-11
sp|P05500|ATP6_OENBE ATP synthase a chain (ATPase protein 6) 67 3e-11
sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6) 67 3e-11
sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6) 67 4e-11
>sp|Q00224|ATP6_MYTED ATP synthase a chain (ATPase protein 6)
Length = 238
Score = 73.6 bits (179), Expect = 4e-13
Identities = 41/123 (33%), Positives = 66/123 (53%)
Frame = +1
Query: 145 KGCEHFGFFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFD 324
KG + GF + LF ++ L S FP+F V+ F F + + L+S
Sbjct: 66 KGLKLSGFPLVMSGLFMMILMLNLSGNFPFFFPVSGQFVFGFSFALSIWTCLVLSSLLCS 125
Query: 325 FVEYIVDFVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLF 504
F + ++ VP GCPL+L PF+V++EL+S +R LTL +RL +N+ AG ++ + S +
Sbjct: 126 FEQGLMSLVPTGCPLILVPFMVVVELISGMLRPLTLVLRLTLNLGAGKVILTMCSSELVV 185
Query: 505 SCL 513
L
Sbjct: 186 GWL 188
>sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 73.6 bits (179), Expect = 4e-13
Identities = 42/109 (38%), Positives = 61/109 (55%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
+F + F LF ++FL LFPY VT + V +VI V L + ++
Sbjct: 68 YFPFVFTLFIFIVFLNILGLFPYVFTVTVHIVVTLGLSFSIVIGVTLGGLWKFKWNFLSI 127
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
+P G PL L+P LVLIE VS+ R ++L VRL N+SAGH+L +++G
Sbjct: 128 LMPAGAPLALAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAG 176
>sp|Q37708|ATP6_ARTSF ATP synthase a chain (ATPase protein 6)
Length = 219
Score = 71.6 bits (174), Expect = 1e-12
Identities = 44/127 (34%), Positives = 62/127 (48%)
Frame = +1
Query: 139 IFKGCEHFGFFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCY 318
+ G FG + LF ++F F LFPY TS L V + I L +
Sbjct: 57 LLMGPASFGANILVIALFLFILFNNFIGLFPYIFTATSHLAVTLSLAVPLWISFILYTWI 116
Query: 319 FDFVEYIVDFVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSF 498
+ + VPLG P L PF+VL+E++S IR +TLSVRL N+ AGH+L L+
Sbjct: 117 KETTNALAHLVPLGTPAPLMPFMVLMEIISNMIRPITLSVRLAANMIAGHLLLTLLGAQG 176
Query: 499 LFSCLFI 519
L++
Sbjct: 177 TLENLYV 183
>sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase protein 6)
Length = 252
Score = 70.5 bits (171), Expect = 3e-12
Identities = 37/109 (33%), Positives = 57/109 (52%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
+F + + LF ++ + PY TS V F +V+ + +E+
Sbjct: 88 YFPFIYTLFIFILINNLIGMVPYSFASTSHFVVTFALSFTIVLGATILGFQKHGLEFFSL 147
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
VP GCPL L P LVLIE +S+ R ++L +RL NI +GHML H+++G
Sbjct: 148 LVPAGCPLALLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG 196
>sp|Q04654|ATP6_VICFA ATP synthase a chain (ATPase protein 6)
Length = 291
Score = 69.7 bits (169), Expect = 6e-12
Identities = 36/109 (33%), Positives = 58/109 (53%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
FF F+ F ++F + PY VTS + + I + + + + ++
Sbjct: 117 FFPCIFVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSF 176
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
+P G PL L+PFLVL+EL+S+ R L+L +RL N+ AGH L ++SG
Sbjct: 177 LLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSG 225
>sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6)
Length = 264
Score = 68.2 bits (165), Expect = 2e-11
Identities = 37/108 (34%), Positives = 57/108 (52%)
Frame = +1
Query: 169 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 348
F+YA +F ++ + PY TS + F +V+ + +E+
Sbjct: 103 FIYALFIF--ILINNLIGMVPYSFASTSHFVLTFALSFTIVLGATILGFQKHGLEFFSLL 160
Query: 349 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
VP GCPL L P LVLIE +S+ R ++L +RL NI +GHML H+++G
Sbjct: 161 VPAGCPLGLLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG 208
>sp|Q36918|ATP6_PENCH ATP synthase a chain precursor (ATPase protein 6)
Length = 257
Score = 67.8 bits (164), Expect = 2e-11
Identities = 39/109 (35%), Positives = 57/109 (52%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
FF ++LF ++ L PY TS + F VV+ + +++
Sbjct: 93 FFPLMYVLFIFILVNNLIGLVPYSFASTSHFILTFSISFTVVLGATILGFQRHGLKFFSL 152
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
FVP GCPL L P LVLIE +S+ R ++L +RL NI +GHML ++SG
Sbjct: 153 FVPSGCPLALLPLLVLIEFISYLSRNVSLGLRLAANILSGHMLLSILSG 201
>sp|P05500|ATP6_OENBE ATP synthase a chain (ATPase protein 6)
Length = 281
Score = 67.4 bits (163), Expect = 3e-11
Identities = 35/109 (32%), Positives = 57/109 (52%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
FF + F ++F + PY VTS + + I + + + + ++
Sbjct: 116 FFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSF 175
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
+P G PL L+PFLVL+EL+S+ R L+L +RL N+ AGH L ++SG
Sbjct: 176 LLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSG 224
>sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6)
Length = 242
Score = 67.4 bits (163), Expect = 3e-11
Identities = 36/109 (33%), Positives = 60/109 (55%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
F F LF ++F + PY TS + V F +V +MV + + ++
Sbjct: 84 FIPLVFSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTL 143
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG 492
F+P G PL L+P +++IEL ++ R ++LS+RL N+ AGH+L +I+G
Sbjct: 144 FLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAG 192
>sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6)
Length = 247
Score = 67.0 bits (162), Expect = 4e-11
Identities = 39/114 (34%), Positives = 62/114 (54%)
Frame = +1
Query: 166 FFVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 345
+F +F ++F L PY +T + F + + L + + + E+
Sbjct: 85 YFPLVLFVFSFILFANLIGLLPYGFTITGHIIFTFQIAFSLFFGITLINFFNNKTEFFNL 144
Query: 346 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFS 507
FVP G P L PFLV+IE+VS+ IR +LSVRL N+ AGH L +++S +F+F+
Sbjct: 145 FVPSGVPKPLIPFLVVIEVVSYLIRPFSLSVRLFANMLAGHTLLNILS-AFIFN 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,068,431
Number of Sequences: 369166
Number of extensions: 481951
Number of successful extensions: 1625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)