Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E17
(448 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6) 88 8e-18
sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6) 84 1e-16
sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6) 84 1e-16
sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase... 79 3e-15
sp|Q9ZEC1|ATP6_RICPR ATP synthase a chain (ATPase protein 6) 79 5e-15
sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6) 78 8e-15
sp|Q00275|ATP6_APILI ATP synthase a chain (ATPase protein 6) 77 1e-14
sp|O63912|ATP6_MYXGL ATP synthase a chain (ATPase protein 6) 76 3e-14
sp|P48879|ATP6_PICCA ATP synthase a chain (ATPase protein 6) 76 4e-14
sp|Q36835|ATP6_TRIRU ATP synthase a chain precursor (ATPase... 75 5e-14
>sp|O47494|ATP6_METSE ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 88.2 bits (217), Expect = 8e-18
Identities = 60/154 (38%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Frame = -1
Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
F + F LF ++FL LFPY VT + V +VI V L + ++
Sbjct: 69 FPFVFTLFIFIVFLNILGLFPYVFTVTVHIVVTLGLSFSIVIGVTLGGLWKFKWNFLSIL 128
Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE*V 89
+P G PL L+P LVLIE VS+ R ++L VRL N+SAGH+L +++G F F+ L V
Sbjct: 129 MPAGAPLALAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAG-FGFNMLTTAGV 187
Query: 88 FFCLFVCYEVFVSL-------VQASVFSILTMVY 8
F V VF+SL +QA VFS+LT +Y
Sbjct: 188 FNIFPVLIMVFISLLEAAVAVIQAYVFSLLTTIY 221
>sp|Q92JP0|ATP6_RICCN ATP synthase a chain (ATPase protein 6)
Length = 242
Score = 84.3 bits (207), Expect = 1e-16
Identities = 46/146 (31%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Frame = -1
Query: 436 FLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDFVPLG 257
F LF ++F + PY TS + V F +V +MV + + ++ F+P G
Sbjct: 89 FSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTLFLPHG 148
Query: 256 CPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG---SFLFSCLFIE*VF 86
PL L+P +++IEL ++ R ++LS+RL N+ AGH+L +I+G S + F+
Sbjct: 149 TPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFLPIPI 208
Query: 85 FCLFVCYEVFVSLVQASVFSILTMVY 8
+ + +E+FV+++QA +F+IL+ +Y
Sbjct: 209 MVILIGFEIFVAILQAYIFTILSCMY 234
>sp|Q37385|ATP6_ACACA ATP synthase a chain (ATPase protein 6)
Length = 247
Score = 84.0 bits (206), Expect = 1e-16
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 7/154 (4%)
Frame = -1
Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
FV++F+LF ++ L PY +T + F + + L + + + E+ F
Sbjct: 91 FVFSFILFANLI-----GLLPYGFTITGHIIFTFQIAFSLFFGITLINFFNNKTEFFNLF 145
Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCL----- 104
VP G P L PFLV+IE+VS+ IR +LSVRL N+ AGH L +++S +F+F+
Sbjct: 146 VPSGVPKPLIPFLVVIEVVSYLIRPFSLSVRLFANMLAGHTLLNILS-AFIFNVFKKYAL 204
Query: 103 --FIE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
F+ +F + E +++VQA +FSILT +Y
Sbjct: 205 ISFLPLLFIVFIIVLEFCIAIVQAYIFSILTCIY 238
>sp|P37212|ATP6_NEUCR ATP synthase a chain precursor (ATPase protein 6)
Length = 252
Score = 79.3 bits (194), Expect = 3e-15
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Frame = -1
Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
F + + LF ++ + PY TS V F +V+ + +E+
Sbjct: 89 FPFIYTLFIFILINNLIGMVPYSFASTSHFVVTFALSFTIVLGATILGFQKHGLEFFSLL 148
Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE*V 89
VP GCPL L P LVLIE +S+ R ++L +RL NI +GHML H+++G F ++ + +
Sbjct: 149 VPAGCPLALLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG-FTYNIMTSGII 207
Query: 88 FFCL----------FVCYEVFVSLVQASVFSILTMVY 8
FF L F E+ ++ +QA VF +LT Y
Sbjct: 208 FFFLGLIPLAFIIAFSGLELGIAFIQAQVFVVLTSGY 244
>sp|Q9ZEC1|ATP6_RICPR ATP synthase a chain (ATPase protein 6)
Length = 242
Score = 79.0 bits (193), Expect = 5e-15
Identities = 42/146 (28%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Frame = -1
Query: 436 FLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDFVPLG 257
F LF ++F + PY TS + V F ++ + V + V ++ F+P G
Sbjct: 89 FSLFIFILFCNLLGMTPYSFTATSHIIVTFTLALLIFLTVTIVGFIKHGVSFLTLFLPHG 148
Query: 256 CPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISG---SFLFSCLFIE*VF 86
P+ L+P +++IEL ++ R ++LS+RL N+ AGH+L +I+ S + F+
Sbjct: 149 TPVWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIASFTVSLMIYLKFLPIPL 208
Query: 85 FCLFVCYEVFVSLVQASVFSILTMVY 8
+ + +E+F++++QA +F+IL+ +Y
Sbjct: 209 MVILIGFEIFIAILQAYIFTILSCMY 234
>sp|P15994|ATP6_PODAN ATP synthase a chain (ATPase protein 6)
Length = 264
Score = 78.2 bits (191), Expect = 8e-15
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Frame = -1
Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
F+YA +F ++ + PY TS + F +V+ + +E+
Sbjct: 103 FIYALFIF--ILINNLIGMVPYSFASTSHFVLTFALSFTIVLGATILGFQKHGLEFFSLL 160
Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE*V 89
VP GCPL L P LVLIE +S+ R ++L +RL NI +GHML H+++G F ++ + +
Sbjct: 161 VPAGCPLGLLPLLVLIEFISYLARNISLGLRLAANILSGHMLLHILAG-FTYNIMTSGII 219
Query: 88 FFCL----------FVCYEVFVSLVQASVFSILTMVY 8
FF L F E+ ++ +QA VF +LT Y
Sbjct: 220 FFFLGLIPLAFIIAFSGLELGIAFIQAQVFVVLTSGY 256
>sp|Q00275|ATP6_APILI ATP synthase a chain (ATPase protein 6)
Length = 226
Score = 77.4 bits (189), Expect = 1e-14
Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Frame = -1
Query: 418 VMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDFVPLGCPLLLS 239
+M SL PY +TS L + + + Y +++ ++ VPL P+ L
Sbjct: 83 IMITNIFSLIPYVFTLTSHLLLNMILSLTLWFSFLIYLIYNNYIMFLSHLVPLNSPVFLM 142
Query: 238 PFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFL---FSCLFIE*VFFCLFVC 68
F+V+IEL+S IR TLS+RL N+ +GH++ L+ G F+ S L I + + +
Sbjct: 143 NFMVIIELISLIIRPWTLSIRLSANLISGHLILTLL-GIFISNFISILPINLMIQNMLLT 201
Query: 67 YEVFVSLVQASVFSILTMVYF 5
E+F+S++Q+ VFSIL ++YF
Sbjct: 202 LEIFMSMIQSYVFSILLILYF 222
>sp|O63912|ATP6_MYXGL ATP synthase a chain (ATPase protein 6)
Length = 228
Score = 76.3 bits (186), Expect = 3e-14
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Frame = -1
Query: 442 YAFLLFKGVMFL---KFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVD 272
+A LL +MF+ + L PY VTS L + + + + +
Sbjct: 70 WALLLMTTLMFIFLNNITGLLPYTFTVTSQLSLNMAMAIPLWLGTIIMGATSQPSHSLAH 129
Query: 271 FVPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFL-----FSC 107
+P G P+ L+PFL++IE +S IR L L VRL NI+AGH+L HL+S + +
Sbjct: 130 LLPEGTPMTLAPFLIVIESISIIIRPLALGVRLTANITAGHLLIHLVSLALINLTKSLPL 189
Query: 106 LFIE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
LF+ F L + E+ VS +QA VF +L +Y
Sbjct: 190 LFLTFSVFILLLILELAVSFIQAYVFVMLVSLY 222
>sp|P48879|ATP6_PICCA ATP synthase a chain (ATPase protein 6)
Length = 256
Score = 75.9 bits (185), Expect = 4e-14
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 10/156 (6%)
Frame = -1
Query: 445 VYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDFV 266
+Y F +F + + PY +TS + ++ + V + Y + + FV
Sbjct: 96 IYTFFIF--IFTANLIGMIPYSFAITSHMVFIISLSVVIWLGVTIIGLYTHGLTFFALFV 153
Query: 265 PLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLISGSFLFSCLFIE*VF 86
P GCPL L+P LVLIEL+S+ R ++L +RL N +GH+L +I G +F+ + + V
Sbjct: 154 PAGCPLALAPLLVLIELLSYSARAISLGLRLSANTLSGHLLM-VILGGLVFNLMSVSIVT 212
Query: 85 FCL----------FVCYEVFVSLVQASVFSILTMVY 8
F L V E ++++Q+ VF+IL Y
Sbjct: 213 FVLGFIPLAGILAIVALEFAIAMIQSYVFAILASGY 248
>sp|Q36835|ATP6_TRIRU ATP synthase a chain precursor (ATPase protein 6)
Length = 255
Score = 75.5 bits (184), Expect = 5e-14
Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 9/156 (5%)
Frame = -1
Query: 448 FVYAFLLFKGVMFLKFSSLFPYFAGVTSDLFVCFCFRSMVVIMVFLTSCYFDFVEYIVDF 269
F+Y +F ++ L PY TS + F VV+ + +++ F
Sbjct: 94 FIYGLFIF--ILMNNLLGLIPYSFSSTSHFILTFFISFTVVLGATILGFQKHQLKFFSLF 151
Query: 268 VPLGCPLLLSPFLVLIELVSF*IRLLTLSVRLMINISAGHMLCHLI---------SGSFL 116
VP GCPL L P LVLIEL+S+ R ++L +RL NI +GHML ++ SG F
Sbjct: 152 VPSGCPLGLLPLLVLIELISYLARNVSLGLRLSANILSGHMLLVILSDFTFKIMSSGIFY 211
Query: 115 FSCLFIE*VFFCLFVCYEVFVSLVQASVFSILTMVY 8
F I F F E+ ++ +Q+ VF +LT Y
Sbjct: 212 FLIGLIPLAFIFAFSGLELGIAFIQSQVFIVLTCSY 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,206,127
Number of Sequences: 369166
Number of extensions: 438315
Number of successful extensions: 1487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)