Planaria EST Database

DrC_00871

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00871
         (759 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CZE3|RAB32_MOUSE  Ras-related protein Rab-32                 253   5e-67
sp|Q13637|RAB32_HUMAN  Ras-related protein Rab-32                 252   7e-67
sp|Q8QZZ8|RAB38_MOUSE  Ras-related protein Rab-38                 242   9e-64
sp|P57729|RAB38_HUMAN  Ras-related protein Rab-38 (Antigen N...   240   3e-63
sp|Q91YQ1|RAB7L_MOUSE  Ras-related protein Rab-7L1 (Rab-7-li...   196   4e-50
sp|O14966|RAB7L_HUMAN  Ras-related protein Rab-7L1 (Rab-7-li...   196   6e-50
sp|O94655|YPT7_SCHPO  Ras-related protein ypt7                    133   6e-31
sp|Q15286|RAB35_HUMAN  Ras-related protein Rab-35 (Rab-1C) (...   125   1e-28
sp|Q9C2L8|RAB7_NEUCR  Probable Ras-related protein Rab7           124   3e-28
sp|P36411|RAB7_DICDI  Ras-related protein Rab7                    124   4e-28

>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32
          Length = 223

 Score =  253 bits (645), Expect = 5e-67
 Identities = 129/207 (62%), Positives = 156/207 (75%), Gaps = 1/207 (0%)
 Frame = +3

Query: 27  KEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQLWD 206
           +E+LFKV VIGELG GKTSIIKRYVH+ FSQHYRATIGVDFALKVL WD  ++VRLQLWD
Sbjct: 20  REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWD 79

Query: 207 IAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPCILL 386
           IAGQERFGNM RVYYK+A+GAF+V+D++R+STF+AV+KWK DLDSKV  PNG PIP +LL
Sbjct: 80  IAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLL 139

Query: 387 GNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKISLG-P 563
            NK D +++   S +  +DQF  +HGF   F+TSAK+NI IDEA   LV+ ML      P
Sbjct: 140 ANKCDQKKDNSQSPSQ-MDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFP 198

Query: 564 EIKKDNDLIKLGNQKPADKSSQDSKCC 644
             + D D IKL  + P  K    S+CC
Sbjct: 199 SEEIDLDRIKLVEEPPTTKPR--SQCC 223

>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32
          Length = 225

 Score =  252 bits (644), Expect = 7e-67
 Identities = 126/206 (61%), Positives = 159/206 (77%)
 Frame = +3

Query: 27  KEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQLWD 206
           +E+LFKV VIGELG GKTSIIKRYVH+ FSQHYRATIGVDFALKVL WD  ++VRLQLWD
Sbjct: 22  REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWD 81

Query: 207 IAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPCILL 386
           IAGQERFGNM RVYYK+A+GAF+V+D++R+STFEAV+KWK DLDSKV  PNG PIP +LL
Sbjct: 82  IAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLL 141

Query: 387 GNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKISLGPE 566
            NK D  ++   S +  +DQF  EHGF   F+TSAK+NI I+EAA  LV+K+L ++    
Sbjct: 142 ANKCDQNKDSSQSPSQ-VDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKIL-VNHQSF 199

Query: 567 IKKDNDLIKLGNQKPADKSSQDSKCC 644
             ++ND+ K+   +   ++   S+CC
Sbjct: 200 PNEENDVDKIKLDQETLRAENKSQCC 225

>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38
          Length = 211

 Score =  242 bits (617), Expect = 9e-64
 Identities = 119/177 (67%), Positives = 141/177 (79%)
 Frame = +3

Query: 15  QMTEKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRL 194
           Q   KE+L+K+ VIG+LG GKTSIIKRYVH+ FS HYRATIGVDFALKVL WD  +VVRL
Sbjct: 2   QTPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRL 61

Query: 195 QLWDIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIP 374
           QLWDIAGQERFGNM RVYY++AMGAFIV+DVTR +TFEAV KWK DLDSK+T PNG P+ 
Sbjct: 62  QLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVS 121

Query: 375 CILLGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKML 545
            +LL NK D  ++  +++   +DQF  EHGFV  F+TSAKENI IDEA+  LV  +L
Sbjct: 122 VVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178

>sp|P57729|RAB38_HUMAN Ras-related protein Rab-38 (Antigen NY-MEL-1)
          Length = 211

 Score =  240 bits (613), Expect = 3e-63
 Identities = 118/177 (66%), Positives = 141/177 (79%)
 Frame = +3

Query: 15  QMTEKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRL 194
           Q   KE+L+K+ VIG+LG GKTSIIKRYVH+ FS HYRATIGVDFALKVL WD  +VVRL
Sbjct: 2   QAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRL 61

Query: 195 QLWDIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIP 374
           QLWDIAGQERFGNM RVYY++AMGAFIV+DVTR +TFEAV KWK DLDSK++ PNG P+ 
Sbjct: 62  QLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVS 121

Query: 375 CILLGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKML 545
            +LL NK D  ++  +++   +DQF  EHGFV  F+TSAKENI IDEA+  LV  +L
Sbjct: 122 VVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178

>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 (Rab-7-like protein 1)
          Length = 204

 Score =  196 bits (499), Expect = 4e-50
 Identities = 95/179 (53%), Positives = 128/179 (71%)
 Frame = +3

Query: 18  MTEKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQ 197
           M  +++LFKV V+G+   GKTS+++RY    FS+HY++T+GVDFALKVL W DS +VRLQ
Sbjct: 1   MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQ 60

Query: 198 LWDIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPC 377
           LWDIAGQERF +M R+YY+DA    I++DVT A+TF    +WK+DLDSK+T P+G+P+PC
Sbjct: 61  LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPC 120

Query: 378 ILLGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKIS 554
           +LL NKSD        D   +D+F  E+GF    +TS KEN  I+EA   LV+KM+  S
Sbjct: 121 LLLANKSDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNS 177

>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 (Rab-7-like protein 1)
          Length = 203

 Score =  196 bits (498), Expect = 6e-50
 Identities = 92/179 (51%), Positives = 128/179 (71%)
 Frame = +3

Query: 18  MTEKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQ 197
           M  +++LFKV V+G+   GKTS+++RY    FS+HY++T+GVDFALKVL W D  +VRLQ
Sbjct: 1   MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60

Query: 198 LWDIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPC 377
           LWDIAGQERF +M R+YY+DA    I++DVT A+TF    +WK+DLDSK+T PNG+P+PC
Sbjct: 61  LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120

Query: 378 ILLGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKIS 554
           +LL NK  C+        + +D+F  E+GF    +TS KEN  I+EA   L++KM++ S
Sbjct: 121 LLLANK--CDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNS 177

>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
          Length = 205

 Score =  133 bits (334), Expect = 6e-31
 Identities = 80/207 (38%), Positives = 115/207 (55%), Gaps = 1/207 (0%)
 Frame = +3

Query: 24  EKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQLW 203
           +K++L KV ++GE G GKTSI+ +YV++ FS+ Y+ATIG DF  K +  DD  VV LQLW
Sbjct: 4   KKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDK-VVTLQLW 62

Query: 204 DIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPCIL 383
           D AGQERF ++   +Y+ A    +VYDV  + +FE +  W+ +   + +  N +  P IL
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122

Query: 384 LGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKISLGP 563
           LGNK D E + R+   +    F    G +  F+TSAKE I + EA   +    L+     
Sbjct: 123 LGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSD 182

Query: 564 EIKKD-NDLIKLGNQKPADKSSQDSKC 641
           +I  D  D I L      D  SQ + C
Sbjct: 183 DIAADFTDPIHL------DMESQKTSC 203

>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 (Rab-1C) (GTP-binding protein RAY)
 sp|Q5U316|RAB35_RAT Ras-related protein Rab-35
 sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35
          Length = 201

 Score =  125 bits (314), Expect = 1e-28
 Identities = 71/209 (33%), Positives = 120/209 (57%), Gaps = 4/209 (1%)
 Frame = +3

Query: 30  EYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQLWDI 209
           ++LFK+ +IG+ G GK+S++ R+    FS  Y  TIGVDF ++ +  +   V +LQ+WD 
Sbjct: 6   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KLQIWDT 64

Query: 210 AGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPCILLG 389
           AGQERF  +   YY+   G  +VYDVT A +F  V +W  +++      N D +  IL+G
Sbjct: 65  AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVG 119

Query: 390 NKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKIS----L 557
           NK+D + E ++ +T    +F  + G ++ F+TSAKEN+ ++E  N + + +L+       
Sbjct: 120 NKND-DPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKDNLA 177

Query: 558 GPEIKKDNDLIKLGNQKPADKSSQDSKCC 644
             + ++ ND++KL        S +  +CC
Sbjct: 178 KQQQQQQNDVVKL-----TKNSKRKKRCC 201

>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
          Length = 205

 Score =  124 bits (311), Expect = 3e-28
 Identities = 67/186 (36%), Positives = 103/186 (55%)
 Frame = +3

Query: 21  TEKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQL 200
           + K+ L KV ++G+ G GKTS++ +YV+K FS  Y+ATIG DF  + +  DD  V  +QL
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVT-MQL 61

Query: 201 WDIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPCI 380
           WD AGQERF ++   +Y+ A    +VYDV  + +F+A+  W+ +   + +  + D  P +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFV 121

Query: 381 LLGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKISLG 560
           +LGNK D E   R+  T     F    G +  F+TSAKE I +++A   +    L     
Sbjct: 122 VLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEES 181

Query: 561 PEIKKD 578
            E   D
Sbjct: 182 EEFSGD 187

>sp|P36411|RAB7_DICDI Ras-related protein Rab7
          Length = 203

 Score =  124 bits (310), Expect = 4e-28
 Identities = 73/208 (35%), Positives = 112/208 (53%)
 Frame = +3

Query: 21  TEKEYLFKVRVIGELGAGKTSIIKRYVHKFFSQHYRATIGVDFALKVLPWDDSSVVRLQL 200
           T+K+ L KV ++G+ G GKTS++ +YV+K FS  Y+ATIG DF  K L  DD  VV +Q+
Sbjct: 3   TKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDR-VVTMQI 61

Query: 201 WDIAGQERFGNMLRVYYKDAMGAFIVYDVTRASTFEAVVKWKKDLDSKVTQPNGDPIPCI 380
           WD AGQERF ++   +Y+ A    + YDV  A TFE +  W+ +   +    + D  P +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFV 121

Query: 381 LLGNKSDCEREGRLSDTNYLDQFVNEHGFVKRFDTSAKENIGIDEAANALVDKMLKISLG 560
           +LGNK D E + R+        +    G +  F+TSAKE I +++A   +    +K+  G
Sbjct: 122 VLGNKIDLENQ-RVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLEDG 180

Query: 561 PEIKKDNDLIKLGNQKPADKSSQDSKCC 644
                  ++  +   +PA      S CC
Sbjct: 181 LVFPIPTNIQVIPEPQPA-----KSGCC 203

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,561,691
Number of Sequences: 369166
Number of extensions: 1766155
Number of successful extensions: 6200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5679
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00871

  1. Dr_sW_022_A11
  2. Dr_sW_018_J13
  3. Dr_sW_019_A04