DrC_00835
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00835 (892 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi (Armitage p... 152 1e-36 sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney le... 145 2e-34 sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney le... 133 6e-31 sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 (Moloney leu... 105 1e-22 sp|P23249|MOV10_MOUSE Putative helicase MOV-10 (Moloney leu... 102 1e-21 sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing ... 97 8e-20 sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-... 59 2e-08 sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 h... 56 1e-07 sp|Q57568|Y104_METJA Hypothetical ATP-binding protein MJ0104 56 1e-07 sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 (Immunogl... 56 2e-07
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi (Armitage protein) Length = 1274 Score = 152 bits (384), Expect = 1e-36 Identities = 83/244 (34%), Positives = 140/244 (57%), Gaps = 7/244 (2%) Frame = +3 Query: 108 PSLIVGDKVNV-----KVN*ETAIVFSGTIEDILCDLIFVKFHETLHSNYTNEECTVTFG 272 PSL++GD + V + +T + G I +L D I +KFH + Y E+ + F Sbjct: 664 PSLVIGDTLRVINPWSDPDSQTTKSYEGIIHKVLFDRILLKFHSSFQEKYNGEDYRLEFY 723 Query: 273 HSRLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYN 452 SR FR+ H I G++G+ LFP K+ + + + + ++K + Sbjct: 724 FSRYSFRKQHHAISKIVGVMGEDFLFPSKVTKRENPQLDV------------YMKDDDMY 771 Query: 453 ML--QLKFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIP 626 + +L++YN+SLN +Q+ AV IL G + +PY+LFGPPG+GKT+TL+E +LQ+ +N+P Sbjct: 772 LYDSKLEWYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLP 831 Query: 627 SSRILLCAPSNSAADLLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYC 806 +RIL+ PSNS+ADL+ RL +S + G+ +R+ ++ + +K+ IPP ++ YC Sbjct: 832 GARILVGTPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQV------EKDLIPPEIMSYC 885 Query: 807 KSID 818 + D Sbjct: 886 ATSD 889
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1) (MOV10-like 1) Length = 1211 Score = 145 bits (365), Expect = 2e-34 Identities = 103/292 (35%), Positives = 148/292 (50%), Gaps = 47/292 (16%) Frame = +3 Query: 108 PSLIVGDKVNVKVN*ET--AIVFSGTIEDILCDLIFVKFHETLHSNYTNEECTVTFGHSR 281 PSL GDK+ +K AI + + +I + + +K + Y E V F ++R Sbjct: 578 PSLYAGDKLILKTQEYNGHAIEYISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNR 637 Query: 282 LPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCV------------------------- 386 RR H +E LG ++LFPE+I ++ Q Sbjct: 638 TTSRRCHFALEHVIH-LGVKVLFPEEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMT 696 Query: 387 -------RLSRSGCNEISAINFVKVEAYNML---------QLKFYNESLNELQRVAVLRI 518 R G ++ + E + + +++F+N LNE Q++AV RI Sbjct: 697 DQAEHGTEERRVGDKDLPVLAPFTAEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRI 756 Query: 519 LHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILLCAPSNSAADLLCLRLDES 698 L G RPLPYILFGPPGTGKTVT++EA+LQV+ +P SRIL+CAPSNSAADL+CLRL ES Sbjct: 757 LSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHES 816 Query: 699 VIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYCKSIDDV----RFLIVI 842 +++ MVR+NA R +E + V PYC+ +D+ RF I+I Sbjct: 817 KVLQPATMVRVNATCRF-------EEIVIDAVKPYCRDGEDIWKASRFRIII 861
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1) (MOV10-like 1) (Cardiac helicase activated by MEF2 protein) (Cardiac-specific RNA helicase) Length = 1187 Score = 133 bits (335), Expect = 6e-31 Identities = 72/130 (55%), Positives = 92/130 (70%), Gaps = 4/130 (3%) Frame = +3 Query: 465 KFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILL 644 +F+N LNE Q++AV RIL G RPLPYILFGPPGTGKTVT++EA+LQV+ +P SRIL+ Sbjct: 741 EFFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILV 800 Query: 645 CAPSNSAADLLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYCKSIDDV 824 CAPSNSAADL+CLRL ES + + MVR+NA R +E I + PYC+ +D+ Sbjct: 801 CAPSNSAADLVCLRLHESKVPKPAAMVRVNATCRF-------EETIIDAIKPYCRDGEDI 853 Query: 825 ----RFLIVI 842 RF I+I Sbjct: 854 WRASRFRIII 863
Score = 37.0 bits (84), Expect = 0.074
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +3
Query: 108 PSLIVGDKVNVKVN*ETA--IVFSGTIEDILCDLIFVKFHETLHSNYTNEECTVTFGHSR 281
PSL GDK+ +K I + G + +I + + +K + Y E V F ++R
Sbjct: 518 PSLYAGDKLILKSQEYNGHVIEYIGYVMEIHEEDVTLKLNPGFEQMYNFEPMDVEFTYNR 577
Query: 282 LPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQ 380
RR H +E LG ++LFPE+I ++ Q
Sbjct: 578 TTSRRCHYALEQVIH-LGVKVLFPEEIILQSPQ 609
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 (Moloney leukemia virus 10 protein) Length = 1003 Score = 105 bits (263), Expect = 1e-22 Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 7/240 (2%) Frame = +3 Query: 108 PSLIVGDKVNVKVN*ET----AIVFSGTIEDILCDLIFVKFHETLHSNYTNE-ECTVTFG 272 PS++ GD + ++ ET I + G + + D + + F +L S + + V F Sbjct: 389 PSVLRGDHLFALLSSETHQEDPITYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFKVNFT 448 Query: 273 HSRLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYN 452 +R P R H +E + G +L+P + P L Sbjct: 449 FNRQPLRVQHRALE----LTGRWLLWPMLFPVAPRDVPLLPSD----------------- 487 Query: 453 MLQLKFYNESL--NELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIP 626 ++LK Y+ SL N Q A+ I+ G +RP PYI+FGPPGTGKTVTLVEAI QV K++P Sbjct: 488 -VKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 546 Query: 627 SSRILLCAPSNSAADLLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYC 806 + IL CAPSNS ADLLC RL V + + +L+ D +P + P C Sbjct: 547 KAHILACAPSNSGADLLCQRL----------RVHLPSSIYRLLAPSRDIRMVPEDIKPCC 596
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 (Moloney leukemia virus 10 protein) Length = 1004 Score = 102 bits (254), Expect = 1e-21 Identities = 74/201 (36%), Positives = 105/201 (52%), Gaps = 7/201 (3%) Frame = +3 Query: 108 PSLIVGDKVNVKVN*ETA----IVFSGTIEDILCDLIFVKFHETLHSNYTNE-ECTVTFG 272 PS++ GD + ++ ET + + G + + D + + F +L S + + V F Sbjct: 390 PSVLRGDHLFALLSSETQQDDPVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTFKVNFT 449 Query: 273 HSRLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYN 452 +R P R H +E + G +L+P + S+ V L S Sbjct: 450 FNRQPLRVQHRALE----LTGRWVLWPMLFPVA-SRGVSLLPSD---------------- 488 Query: 453 MLQLKFYNESL--NELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIP 626 ++ K Y+ SL N Q A+ I+ G +RP PYI+FGPPGTGKTVTLVEAI QV K++P Sbjct: 489 -VKFKLYDRSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 547 Query: 627 SSRILLCAPSNSAADLLCLRL 689 + IL CAPSNS ADLLC RL Sbjct: 548 KAHILACAPSNSGADLLCQRL 568
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing defective protein 3) Length = 1002 Score = 96.7 bits (239), Expect = 8e-20 Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 8/241 (3%) Frame = +3 Query: 108 PSLIVGDKVNVK--VN*ETAIVFSGTIEDILCDLIFVKFHETLHSNYT-NEECTVTFGHS 278 PSL+ GD + V+ + T + G + + D + +KF H +T V F ++ Sbjct: 293 PSLVHGDFIFVRHAYDDGTDHAYQGFVHRVEADEVHMKFASEFHQRHTAGSVYNVRFTYN 352 Query: 279 RLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYNML 458 R+ RR++ ++ +L LFP SG I FV + Sbjct: 353 RINTRRLYQAVDAA-EMLDPNFLFPSL------------HSGKRMIKTKPFVPI------ 393 Query: 459 QLKFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRI 638 + +LN Q ++ +L P PY++ GPPGTGKT+TLVEAI+Q+Y ++R+ Sbjct: 394 -----SPALNAEQICSIEMVLGCKGAP-PYVIHGPPGTGKTMTLVEAIVQLYTTQRNARV 447 Query: 639 LLCAPSNSAAD-----LLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPY 803 L+CAPSNSAAD LLCL E V I+ E+ R+NA R+ E I P ++ + Sbjct: 448 LVCAPSNSAADHILEKLLCL---EGVRIKDNEIFRLNAATRSY-------EEIKPEIIRF 497 Query: 804 C 806 C Sbjct: 498 C 498
Score = 30.0 bits (66), Expect = 9.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 1 INTKEEMKQFLLENVRLIRRRETFGIEVPGLSE 99
+ +E+M+ + +ENV + RR +EVPGL+E
Sbjct: 258 LQLEEDMRAYDMENVSMKRRGIYLSLEVPGLAE 290
>sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-ATP7 intergenic region Length = 683 Score = 58.5 bits (140), Expect = 2e-08 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 5/110 (4%) Frame = +3 Query: 468 FYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILLC 647 F N +LN+ Q+ A+ ++ I+ GPPGTGKT TL+E I Q+ P RIL+C Sbjct: 203 FLNPNLNDSQKTAINFAINNDLT----IIHGPPGTGKTFTLIELIQQLLIKNPEERILIC 258 Query: 648 APSNSAADLLCLRL----DESVIIESGEMVR-MNAFRRTILSEMSDKEPI 782 PSN + D + RL ++++ G R +++ +R L +S K I Sbjct: 259 GPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTI 308
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog Length = 1093 Score = 56.2 bits (134), Expect = 1e-07 Identities = 38/94 (40%), Positives = 52/94 (55%) Frame = +3 Query: 465 KFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILL 644 KF+ L EL + I S PL I GPPGTGKTVT I + K + +S++L+ Sbjct: 447 KFHVPGLPELNASQIAAIKQVLSNPLSLIQ-GPPGTGKTVTSATIIYHLAK-MSNSQVLV 504 Query: 645 CAPSNSAADLLCLRLDESVIIESGEMVRMNAFRR 746 CAPSN A D LC R+ + + ++VR+ A R Sbjct: 505 CAPSNVAVDQLCERIHRTGL----KVVRLTAKSR 534
>sp|Q57568|Y104_METJA Hypothetical ATP-binding protein MJ0104 Length = 663 Score = 56.2 bits (134), Expect = 1e-07 Identities = 33/72 (45%), Positives = 49/72 (68%) Frame = +3 Query: 456 LQLKFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSR 635 ++L+FY+++LNE Q++AV + + SR L Y++ GPPGTGKT T+ E I+Q K + Sbjct: 176 IKLEFYDKNLNESQKLAVKKAV--LSRDL-YLIHGPPGTGKTRTITEVIVQEVK-FNKHK 231 Query: 636 ILLCAPSNSAAD 671 +L A SN AAD Sbjct: 232 VLATADSNIAAD 243
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein) (RIPE3B-binding complex 3B2 p110 subunit) (RIP-1) Length = 989 Score = 55.8 bits (133), Expect = 2e-07 Identities = 36/74 (48%), Positives = 44/74 (59%) Frame = +3 Query: 468 FYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILLC 647 FYN +L+ Q+ AV L ++ I+ GPPGTGKT T+VE ILQ K +IL C Sbjct: 186 FYNTALDPSQKEAVSFAL---AQKEVAIIHGPPGTGKTTTVVEIILQAVKQ--GLKILCC 240 Query: 648 APSNSAADLLCLRL 689 APSN A D L RL Sbjct: 241 APSNVAVDNLVERL 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,038,768
Number of Sequences: 369166
Number of extensions: 1933471
Number of successful extensions: 7030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7005
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
