Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E01
(802 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi (Armitage p... 152 1e-36
sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney le... 145 2e-34
sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney le... 133 5e-31
sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 (Moloney leu... 105 1e-22
sp|P23249|MOV10_MOUSE Putative helicase MOV-10 (Moloney leu... 102 1e-21
sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing ... 97 7e-20
sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-... 59 2e-08
sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 h... 56 1e-07
sp|Q57568|Y104_METJA Hypothetical ATP-binding protein MJ0104 56 1e-07
sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 (Immunogl... 56 1e-07
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi (Armitage protein)
Length = 1274
Score = 152 bits (384), Expect = 1e-36
Identities = 83/244 (34%), Positives = 140/244 (57%), Gaps = 7/244 (2%)
Frame = +1
Query: 46 PSLIVGDKVNV-----KVN*ETAIVFSGTIEDILCDLIFVKFHETLHSNYTNEECTVTFG 210
PSL++GD + V + +T + G I +L D I +KFH + Y E+ + F
Sbjct: 664 PSLVIGDTLRVINPWSDPDSQTTKSYEGIIHKVLFDRILLKFHSSFQEKYNGEDYRLEFY 723
Query: 211 HSRLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYN 390
SR FR+ H I G++G+ LFP K+ + + + + ++K +
Sbjct: 724 FSRYSFRKQHHAISKIVGVMGEDFLFPSKVTKRENPQLDV------------YMKDDDMY 771
Query: 391 ML--QLKFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIP 564
+ +L++YN+SLN +Q+ AV IL G + +PY+LFGPPG+GKT+TL+E +LQ+ +N+P
Sbjct: 772 LYDSKLEWYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLP 831
Query: 565 SSRILLCAPSNSAADLLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYC 744
+RIL+ PSNS+ADL+ RL +S + G+ +R+ ++ + +K+ IPP ++ YC
Sbjct: 832 GARILVGTPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQV------EKDLIPPEIMSYC 885
Query: 745 KSID 756
+ D
Sbjct: 886 ATSD 889
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1)
(MOV10-like 1)
Length = 1211
Score = 145 bits (365), Expect = 2e-34
Identities = 103/292 (35%), Positives = 148/292 (50%), Gaps = 47/292 (16%)
Frame = +1
Query: 46 PSLIVGDKVNVKVN*ET--AIVFSGTIEDILCDLIFVKFHETLHSNYTNEECTVTFGHSR 219
PSL GDK+ +K AI + + +I + + +K + Y E V F ++R
Sbjct: 578 PSLYAGDKLILKTQEYNGHAIEYISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNR 637
Query: 220 LPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCV------------------------- 324
RR H +E LG ++LFPE+I ++ Q
Sbjct: 638 TTSRRCHFALEHVIH-LGVKVLFPEEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMT 696
Query: 325 -------RLSRSGCNEISAINFVKVEAYNML---------QLKFYNESLNELQRVAVLRI 456
R G ++ + E + + +++F+N LNE Q++AV RI
Sbjct: 697 DQAEHGTEERRVGDKDLPVLAPFTAEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRI 756
Query: 457 LHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILLCAPSNSAADLLCLRLDES 636
L G RPLPYILFGPPGTGKTVT++EA+LQV+ +P SRIL+CAPSNSAADL+CLRL ES
Sbjct: 757 LSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHES 816
Query: 637 VIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYCKSIDDV----RFLIVI 780
+++ MVR+NA R +E + V PYC+ +D+ RF I+I
Sbjct: 817 KVLQPATMVRVNATCRF-------EEIVIDAVKPYCRDGEDIWKASRFRIII 861
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1)
(MOV10-like 1) (Cardiac helicase activated by MEF2
protein) (Cardiac-specific RNA helicase)
Length = 1187
Score = 133 bits (335), Expect = 5e-31
Identities = 72/130 (55%), Positives = 92/130 (70%), Gaps = 4/130 (3%)
Frame = +1
Query: 403 KFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILL 582
+F+N LNE Q++AV RIL G RPLPYILFGPPGTGKTVT++EA+LQV+ +P SRIL+
Sbjct: 741 EFFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILV 800
Query: 583 CAPSNSAADLLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYCKSIDDV 762
CAPSNSAADL+CLRL ES + + MVR+NA R +E I + PYC+ +D+
Sbjct: 801 CAPSNSAADLVCLRLHESKVPKPAAMVRVNATCRF-------EETIIDAIKPYCRDGEDI 853
Query: 763 ----RFLIVI 780
RF I+I
Sbjct: 854 WRASRFRIII 863
Score = 37.0 bits (84), Expect = 0.063
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +1
Query: 46 PSLIVGDKVNVKVN*ETA--IVFSGTIEDILCDLIFVKFHETLHSNYTNEECTVTFGHSR 219
PSL GDK+ +K I + G + +I + + +K + Y E V F ++R
Sbjct: 518 PSLYAGDKLILKSQEYNGHVIEYIGYVMEIHEEDVTLKLNPGFEQMYNFEPMDVEFTYNR 577
Query: 220 LPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQ 318
RR H +E LG ++LFPE+I ++ Q
Sbjct: 578 TTSRRCHYALEQVIH-LGVKVLFPEEIILQSPQ 609
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 (Moloney leukemia virus 10 protein)
Length = 1003
Score = 105 bits (263), Expect = 1e-22
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 7/240 (2%)
Frame = +1
Query: 46 PSLIVGDKVNVKVN*ET----AIVFSGTIEDILCDLIFVKFHETLHSNYTNE-ECTVTFG 210
PS++ GD + ++ ET I + G + + D + + F +L S + + V F
Sbjct: 389 PSVLRGDHLFALLSSETHQEDPITYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFKVNFT 448
Query: 211 HSRLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYN 390
+R P R H +E + G +L+P + P L
Sbjct: 449 FNRQPLRVQHRALE----LTGRWLLWPMLFPVAPRDVPLLPSD----------------- 487
Query: 391 MLQLKFYNESL--NELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIP 564
++LK Y+ SL N Q A+ I+ G +RP PYI+FGPPGTGKTVTLVEAI QV K++P
Sbjct: 488 -VKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 546
Query: 565 SSRILLCAPSNSAADLLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPYC 744
+ IL CAPSNS ADLLC RL V + + +L+ D +P + P C
Sbjct: 547 KAHILACAPSNSGADLLCQRL----------RVHLPSSIYRLLAPSRDIRMVPEDIKPCC 596
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 (Moloney leukemia virus 10 protein)
Length = 1004
Score = 102 bits (254), Expect = 1e-21
Identities = 74/201 (36%), Positives = 105/201 (52%), Gaps = 7/201 (3%)
Frame = +1
Query: 46 PSLIVGDKVNVKVN*ETA----IVFSGTIEDILCDLIFVKFHETLHSNYTNE-ECTVTFG 210
PS++ GD + ++ ET + + G + + D + + F +L S + + V F
Sbjct: 390 PSVLRGDHLFALLSSETQQDDPVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTFKVNFT 449
Query: 211 HSRLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYN 390
+R P R H +E + G +L+P + S+ V L S
Sbjct: 450 FNRQPLRVQHRALE----LTGRWVLWPMLFPVA-SRGVSLLPSD---------------- 488
Query: 391 MLQLKFYNESL--NELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIP 564
++ K Y+ SL N Q A+ I+ G +RP PYI+FGPPGTGKTVTLVEAI QV K++P
Sbjct: 489 -VKFKLYDRSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 547
Query: 565 SSRILLCAPSNSAADLLCLRL 627
+ IL CAPSNS ADLLC RL
Sbjct: 548 KAHILACAPSNSGADLLCQRL 568
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing defective protein 3)
Length = 1002
Score = 96.7 bits (239), Expect = 7e-20
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 8/241 (3%)
Frame = +1
Query: 46 PSLIVGDKVNVK--VN*ETAIVFSGTIEDILCDLIFVKFHETLHSNYT-NEECTVTFGHS 216
PSL+ GD + V+ + T + G + + D + +KF H +T V F ++
Sbjct: 293 PSLVHGDFIFVRHAYDDGTDHAYQGFVHRVEADEVHMKFASEFHQRHTAGSVYNVRFTYN 352
Query: 217 RLPFRRIHLGIEVGCGILGDRILFPEKIEMKPSQCVRLSRSGCNEISAINFVKVEAYNML 396
R+ RR++ ++ +L LFP SG I FV +
Sbjct: 353 RINTRRLYQAVDAA-EMLDPNFLFPSL------------HSGKRMIKTKPFVPI------ 393
Query: 397 QLKFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRI 576
+ +LN Q ++ +L P PY++ GPPGTGKT+TLVEAI+Q+Y ++R+
Sbjct: 394 -----SPALNAEQICSIEMVLGCKGAP-PYVIHGPPGTGKTMTLVEAIVQLYTTQRNARV 447
Query: 577 LLCAPSNSAAD-----LLCLRLDESVIIESGEMVRMNAFRRTILSEMSDKEPIPPRVLPY 741
L+CAPSNSAAD LLCL E V I+ E+ R+NA R+ E I P ++ +
Sbjct: 448 LVCAPSNSAADHILEKLLCL---EGVRIKDNEIFRLNAATRSY-------EEIKPEIIRF 497
Query: 742 C 744
C
Sbjct: 498 C 498
>sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-ATP7 intergenic region
Length = 683
Score = 58.5 bits (140), Expect = 2e-08
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +1
Query: 406 FYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILLC 585
F N +LN+ Q+ A+ ++ I+ GPPGTGKT TL+E I Q+ P RIL+C
Sbjct: 203 FLNPNLNDSQKTAINFAINNDLT----IIHGPPGTGKTFTLIELIQQLLIKNPEERILIC 258
Query: 586 APSNSAADLLCLRL----DESVIIESGEMVR-MNAFRRTILSEMSDKEPI 720
PSN + D + RL ++++ G R +++ +R L +S K I
Sbjct: 259 GPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTI 308
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog
Length = 1093
Score = 56.2 bits (134), Expect = 1e-07
Identities = 38/94 (40%), Positives = 52/94 (55%)
Frame = +1
Query: 403 KFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILL 582
KF+ L EL + I S PL I GPPGTGKTVT I + K + +S++L+
Sbjct: 447 KFHVPGLPELNASQIAAIKQVLSNPLSLIQ-GPPGTGKTVTSATIIYHLAK-MSNSQVLV 504
Query: 583 CAPSNSAADLLCLRLDESVIIESGEMVRMNAFRR 684
CAPSN A D LC R+ + + ++VR+ A R
Sbjct: 505 CAPSNVAVDQLCERIHRTGL----KVVRLTAKSR 534
>sp|Q57568|Y104_METJA Hypothetical ATP-binding protein MJ0104
Length = 663
Score = 56.2 bits (134), Expect = 1e-07
Identities = 33/72 (45%), Positives = 49/72 (68%)
Frame = +1
Query: 394 LQLKFYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSR 573
++L+FY+++LNE Q++AV + + SR L Y++ GPPGTGKT T+ E I+Q K +
Sbjct: 176 IKLEFYDKNLNESQKLAVKKAV--LSRDL-YLIHGPPGTGKTRTITEVIVQEVK-FNKHK 231
Query: 574 ILLCAPSNSAAD 609
+L A SN AAD
Sbjct: 232 VLATADSNIAAD 243
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 (Immunoglobulin mu-binding protein 2)
(SMUBP-2) (Insulin II gene enhancer-binding protein)
(RIPE3B-binding complex 3B2 p110 subunit) (RIP-1)
Length = 989
Score = 55.8 bits (133), Expect = 1e-07
Identities = 36/74 (48%), Positives = 44/74 (59%)
Frame = +1
Query: 406 FYNESLNELQRVAVLRILHGYSRPLPYILFGPPGTGKTVTLVEAILQVYKNIPSSRILLC 585
FYN +L+ Q+ AV L ++ I+ GPPGTGKT T+VE ILQ K +IL C
Sbjct: 186 FYNTALDPSQKEAVSFAL---AQKEVAIIHGPPGTGKTTTVVEIILQAVKQ--GLKILCC 240
Query: 586 APSNSAADLLCLRL 627
APSN A D L RL
Sbjct: 241 APSNVAVDNLVERL 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,368,538
Number of Sequences: 369166
Number of extensions: 1720928
Number of successful extensions: 6528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6503
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)