Planaria EST Database

DrC_00833

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00833
         (1075 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14103|HNRPD_HUMAN  Heterogeneous nuclear ribonucleoprote...   176   8e-44
sp|Q60668|HNRPD_MOUSE  Heterogeneous nuclear ribonucleoprote...   176   8e-44
sp|Q99020|ROAA_MOUSE  Heterogeneous nuclear ribonucleoprotei...   176   1e-43
sp|Q9JJ54|HNRPD_RAT  Heterogeneous nuclear ribonucleoprotein...   176   1e-43
sp|Q99729|ROAA_HUMAN  Heterogeneous nuclear ribonucleoprotei...   167   6e-41
sp|Q08473|SQD_DROME  RNA-binding protein squid (Heterogeneou...   151   3e-36
sp|P09867|ROA1_BOVIN  Heterogeneous nuclear ribonucleoprotei...   136   9e-32
sp|P49312|ROA1_MOUSE  Heterogeneous nuclear ribonucleoprotei...   136   9e-32
sp|P09651|ROA1_HUMAN  Heterogeneous nuclear ribonucleoprotei...   136   9e-32
sp|P04256|ROA1_RAT  Heterogeneous nuclear ribonucleoprotein ...   135   2e-31

>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score =  176 bits (447), Expect = 8e-44
 Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
 Frame = +2

Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
           K+F+GGLSW+TT++DLK+YF  +G+V  C +KLD +TG SRGFGFV     +S+ KV++ 
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 377 PEHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDT 550
            EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP D 
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217

Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 700
              KR+ + F++F  E+  K  +  +  +V  SKC++++A+ K+Q  + +
Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267


 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           +K+FVGGLS +T EE ++ YF  +G+V    + +D  T   RGF F+T   E+ +KK++E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241

Query: 374 VPEHRLKNKKIDPKPA 421
              H +   K + K A
Sbjct: 242 KKYHNVGLSKCEIKVA 257

>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score =  176 bits (447), Expect = 8e-44
 Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
 Frame = +2

Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
           K+F+GGLSW+TT++DLK+YF  +G+V  C +KLD +TG SRGFGFV     +S+ KV++ 
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 377 PEHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDT 550
            EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP D 
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217

Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 700
              KR+ + F++F  E+  K  +  +  +V  SKC++++A+ K+Q  + +
Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267


 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           +K+FVGGLS +T EE ++ YF  +G+V    + +D  T   RGF F+T   E+ +KK++E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241

Query: 374 VPEHRLKNKKIDPKPA 421
              H +   K + K A
Sbjct: 242 KKYHNVGLSKCEIKVA 257

>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score =  176 bits (446), Expect = 1e-43
 Identities = 81/163 (49%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
 Frame = +2

Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
           K+FVGGLSW+T+++DLK+YF  +G+V  C IK+D  TG SRGFGF+      S++KVL+ 
Sbjct: 76  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135

Query: 377 PEHRLKNKKIDPKPAKPTK-EPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 553
            EHRL  + IDPK A   K +P KKIFVGGL+P+ TEE+I+EYF Q+G +E+++LP D  
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPK 195

Query: 554 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKD 682
             KR+ +VF++F  ED  K  +  +   V GSKC++++A PK+
Sbjct: 196 LNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238


 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           +K+FVGGL+ E TEE ++ YF  +G++    + +D      RGF F+T   ED +KKVLE
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218

Query: 374 VPEHRLKNKKIDPKPAKP 427
              H +   K + K A+P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236


 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
 Frame = +2

Query: 419 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 598
           A   +E   K+FVGGLS D +++ +K+YF+++G V    +  D + G+ + + F+ F   
Sbjct: 67  ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126

Query: 599 DAAKNAIINEKQDVLGSKCDVR--MAVPKDQVNK 694
            + +  +  ++  + G   D +  MA+ KD V K
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 160

>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 353

 Score =  176 bits (445), Expect = 1e-43
 Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 2/170 (1%)
 Frame = +2

Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
           K+F+GGLSW+TT++DLK+YF  +G V  C +KLD +TG SRGFGFV     +S+ KV++ 
Sbjct: 96  KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155

Query: 377 PEHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDT 550
            EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP D 
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 215

Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 700
              KR+ + F++F  E+  K  +  +  +V  SKC++++A+ K+Q  + +
Sbjct: 216 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 265


 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           +K+FVGGLS +T EE ++ YF  +G+V    + +D  T   RGF F+T   E+ +KK++E
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239

Query: 374 VPEHRLKNKKIDPKPA 421
              H +   K + K A
Sbjct: 240 KKYHNVGLSKCEIKVA 255

>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
           binding protein 1) (ABBP-1)
          Length = 331

 Score =  167 bits (422), Expect = 6e-41
 Identities = 79/164 (48%), Positives = 116/164 (70%), Gaps = 2/164 (1%)
 Frame = +2

Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
           K+FVGGLSW+T+++DLK+YF  +G+V  C IK+D  TG SRGFGF+      S++KVL+ 
Sbjct: 69  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128

Query: 377 PEHRLKNKKIDPKPAKP-TKEPNKKIFVGGLSPD-VTEEQIKEYFSQYGSVESVDLPFDT 550
            EHRL  + IDPK A    K+P KKIFVGGL+P+  TEE+I+EYF ++G +E+++LP D 
Sbjct: 129 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDP 188

Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKD 682
              KR+ +VF++F  E+  K  +  +   V GSKC++++A PK+
Sbjct: 189 KLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 232


 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +2

Query: 194 RKLFVGGLSWET-TEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVL 370
           +K+FVGGL+ E+ TEE ++ YF  +G++    + +D      RGF F+T   E+ +KKVL
Sbjct: 152 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 211

Query: 371 EVPEHRLKNKKIDPKPAKP 427
           E   H +   K + K A+P
Sbjct: 212 EKKFHTVSGSKCEIKVAQP 230


 Score = 51.2 bits (121), Expect = 5e-06
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = +2

Query: 377 PEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSK 556
           P   ++    D   A   +E   K+FVGGLS D +++ +K+YF+++G V    +  D + 
Sbjct: 46  PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105

Query: 557 GKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVR--MAVPKDQVNK 694
           G+ + + F+ F    + +  +  ++  + G   D +  MA+ KD V K
Sbjct: 106 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 153

>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
           40) (HNRNP 40)
          Length = 344

 Score =  151 bits (382), Expect = 3e-36
 Identities = 69/164 (42%), Positives = 108/164 (65%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           RKLFVGGLSWETTE++L+++F  +G++    +K D  TG SRGF F+     +++ KV  
Sbjct: 56  RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115

Query: 374 VPEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 553
             EH + +KK+DPK AK     + KIFVGGL+ ++++E+IK YF Q+G++  V++PFD  
Sbjct: 116 ADEHIINSKKVDPKKAKAR---HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQ 172

Query: 554 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQ 685
           K +RK + F++F +E    + +   KQ + G + DV+ A PK +
Sbjct: 173 KSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216


 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 24/84 (28%), Positives = 50/84 (59%)
 Frame = +2

Query: 419 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 598
           A   ++ ++K+FVGGLS + TE++++++F +YG +ES+++  D   G+ + + F+ FT  
Sbjct: 48  ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107

Query: 599 DAAKNAIINEKQDVLGSKCDVRMA 670
           +A       ++  +   K D + A
Sbjct: 108 EAIDKVSAADEHIINSKKVDPKKA 131

>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (Unwinding protein 1) (UP1)
          Length = 195

 Score =  136 bits (343), Expect = 9e-32
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           RKLF+GGLS+ETT+E L+++FE WG +  CV+  D  T  SRGFGFVT  T + +   + 
Sbjct: 13  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72

Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
              H++  + ++PK A   ++          KKIFVGG+  D  E  +++YF QYG +E 
Sbjct: 73  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 132

Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
           +++  D   GK++ + F++F   D+    +I +   V G  C+VR A+ K ++
Sbjct: 133 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 185


 Score = 43.1 bits (100), Expect = 0.001
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
 Frame = +2

Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
           KEP   +K+F+GGLS + T+E ++ +F Q+G++    +  D +  + + + F+++ T   
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
            DAA NA           K D R+  PK  V++
Sbjct: 67  VDAAMNA--------RPHKVDGRVVEPKRAVSR 91

>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
          Length = 320

 Score =  136 bits (343), Expect = 9e-32
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           RKLF+GGLS+ETT+E L+++FE WG +  CV+  D  T  SRGFGFVT  T + +   + 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
              H++  + ++PK A   ++          KKIFVGG+  D  E  +++YF QYG +E 
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
           +++  D   GK++ + F++F   D+    +I +   V G  C+VR A+ K ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186


 Score = 43.1 bits (100), Expect = 0.001
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
 Frame = +2

Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
           KEP   +K+F+GGLS + T+E ++ +F Q+G++    +  D +  + + + F+++ T   
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
            DAA NA           K D R+  PK  V++
Sbjct: 68  VDAAMNA--------RPHKVDGRVVEPKRAVSR 92

>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1)
          Length = 372

 Score =  136 bits (343), Expect = 9e-32
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           RKLF+GGLS+ETT+E L+++FE WG +  CV+  D  T  SRGFGFVT  T + +   + 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
              H++  + ++PK A   ++          KKIFVGG+  D  E  +++YF QYG +E 
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
           +++  D   GK++ + F++F   D+    +I +   V G  C+VR A+ K ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186


 Score = 43.1 bits (100), Expect = 0.001
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
 Frame = +2

Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
           KEP   +K+F+GGLS + T+E ++ +F Q+G++    +  D +  + + + F+++ T   
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
            DAA NA           K D R+  PK  V++
Sbjct: 68  VDAAMNA--------RPHKVDGRVVEPKRAVSR 92

>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (HDP)
          Length = 320

 Score =  135 bits (341), Expect = 2e-31
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
 Frame = +2

Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
           RKLF+GGLS+ETT+E L+++FE WG +  CV+  D  T  SRGFGFVT  T + +   + 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
              H++  + ++PK A   ++          KKIFVGG+  D  E  +++YF QYG +E 
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
           +++  D   GK++ + F++F   D+    +I +   V G  C+VR A+ K ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186


 Score = 43.1 bits (100), Expect = 0.001
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
 Frame = +2

Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
           KEP   +K+F+GGLS + T+E ++ +F Q+G++    +  D +  + + + F+++ T   
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
            DAA NA           K D R+  PK  V++
Sbjct: 68  VDAAMNA--------RPHKVDGRVVEPKRAVSR 92

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,599,486
Number of Sequences: 369166
Number of extensions: 1949865
Number of successful extensions: 6741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6513
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 11677841700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00833

  1. Dr_sW_003_O15
  2. Dr_sW_021_D06
  3. Dr_sW_017_M01
  4. Dr_sW_012_B06
  5. Dr_sW_026_I08