Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_O15
(410 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprote... 130 8e-31
sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprote... 130 8e-31
sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein... 130 1e-30
sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotei... 126 1e-29
sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotei... 119 2e-27
sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneou... 102 3e-22
sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein... 100 9e-22
sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2... 92 3e-19
sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2... 92 3e-19
sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1... 91 9e-19
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 130 bits (328), Expect = 8e-31
Identities = 66/138 (47%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP-- 176
F +G+V C +KL +TG SRGFGFV S+ KV++ EH+L K IDPK AK
Sbjct: 117 FSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK 176
Query: 177 TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAA 356
TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E
Sbjct: 177 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236
Query: 357 KNAIINEKQYVLCSKCDV 410
K + + V SKC++
Sbjct: 237 KKIMEKKYHNVGLSKCEI 254
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +3
Query: 195 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIIN 374
K+F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156
Query: 375 EKQYVLCSK 401
+K++ L K
Sbjct: 157 QKEHKLNGK 165
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPA 170
F +G+V + + T RGF F+T E +KK++E H + K + K A
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 257
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 130 bits (328), Expect = 8e-31
Identities = 66/138 (47%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP-- 176
F +G+V C +KL +TG SRGFGFV S+ KV++ EH+L K IDPK AK
Sbjct: 117 FSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK 176
Query: 177 TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAA 356
TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E
Sbjct: 177 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236
Query: 357 KNAIINEKQYVLCSKCDV 410
K + + V SKC++
Sbjct: 237 KKIMEKKYHNVGLSKCEI 254
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +3
Query: 195 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIIN 374
K+F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156
Query: 375 EKQYVLCSK 401
+K++ L K
Sbjct: 157 QKEHKLNGK 165
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPA 170
F +G+V + + T RGF F+T E +KK++E H + K + K A
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 257
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 353
Score = 130 bits (326), Expect = 1e-30
Identities = 66/138 (47%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP-- 176
F +G V C +KL +TG SRGFGFV S+ KV++ EH+L K IDPK AK
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK 174
Query: 177 TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAA 356
TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D KR+ + F++F E
Sbjct: 175 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 234
Query: 357 KNAIINEKQYVLCSKCDV 410
K + + V SKC++
Sbjct: 235 KKIMEKKYHNVGLSKCEI 252
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +3
Query: 195 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIIN 374
K+F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + +++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 154
Query: 375 EKQYVLCSK 401
+K++ L K
Sbjct: 155 QKEHKLNGK 163
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPA 170
F +G+V + + T RGF F+T E +KK++E H + K + K A
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 255
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
(CArG-binding factor-A) (CBF-A)
Length = 285
Score = 126 bits (317), Expect = 1e-29
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKPTK 182
F +G+V C IK+ TG SRGFGF+ S++KVL+ EHRL + IDPK A K
Sbjct: 95 FTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMK 154
Query: 183 -EPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAK 359
+P KKIFVGGL+P+ TEE+I+EYF Q+G +E+++LP D KR+ +VF++F E K
Sbjct: 155 KDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214
Query: 360 NAIINEKQYVLCSKCDV 410
+ + V SKC++
Sbjct: 215 KVLEKKFHTVSGSKCEI 231
Score = 45.8 bits (107), Expect = 3e-05
Identities = 21/75 (28%), Positives = 46/75 (61%)
Frame = +3
Query: 168 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 347
A +E K+FVGGLS D +++ +K+YF+++G V + D + G+ + + F+ F +
Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KD 125
Query: 348 YAAKNAIINEKQYVL 392
++ ++++K++ L
Sbjct: 126 SSSVEKVLDQKEHRL 140
Score = 34.3 bits (77), Expect = 0.099
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP 176
F +G++ + + RGF F+T E +KKVLE H + K + K A+P
Sbjct: 179 FGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQP 236
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
binding protein 1) (ABBP-1)
Length = 331
Score = 119 bits (299), Expect = 2e-27
Identities = 61/138 (44%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP-T 179
F +G+V C IK+ TG SRGFGF+ S++KVL+ EHRL + IDPK A
Sbjct: 88 FTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK 147
Query: 180 KEPNKKIFVGGLSPD-VTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAA 356
K+P KKIFVGGL+P+ TEE+I+EYF ++G +E+++LP D KR+ +VF++F E
Sbjct: 148 KDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 207
Query: 357 KNAIINEKQYVLCSKCDV 410
K + + V SKC++
Sbjct: 208 KKVLEKKFHTVSGSKCEI 225
Score = 47.8 bits (112), Expect = 9e-06
Identities = 24/89 (26%), Positives = 50/89 (56%)
Frame = +3
Query: 126 PEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSK 305
P ++ D A +E K+FVGGLS D +++ +K+YF+++G V + D +
Sbjct: 46 PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105
Query: 306 GKRKPYVFLSFTTEYAAKNAIINEKQYVL 392
G+ + + F+ F + A+ ++++K++ L
Sbjct: 106 GRSRGFGFILF-KDAASVEKVLDQKEHRL 133
Score = 34.7 bits (78), Expect = 0.076
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP 176
F +G++ + + RGF F+T E +KKVLE H + K + K A+P
Sbjct: 173 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 230
>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
40) (HNRNP 40)
Length = 344
Score = 102 bits (254), Expect = 3e-22
Identities = 49/136 (36%), Positives = 80/136 (58%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKPTK 182
F +G++ +K TG SRGF F+ ++ KV EH + +KK+DPK AK
Sbjct: 76 FGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKAR- 134
Query: 183 EPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKN 362
+ KIFVGGL+ ++++E+IK YF Q+G++ V++PFD K +RK + F++F +E +
Sbjct: 135 --HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTD 192
Query: 363 AIINEKQYVLCSKCDV 410
+ KQ + + DV
Sbjct: 193 LLKTPKQKIAGKEVDV 208
Score = 55.8 bits (133), Expect = 3e-08
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Frame = +3
Query: 168 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 347
A ++ ++K+FVGGLS + TE++++++F +YG +ES+++ D G+ + + F+ FT
Sbjct: 48 ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107
Query: 348 ------YAAKNAIINEKQ 383
AA IIN K+
Sbjct: 108 EAIDKVSAADEHIINSKK 125
Score = 36.6 bits (83), Expect = 0.020
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKPTK 182
F +G + + K +GF F+T +E + +L+ P+ ++ K++D K A P
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Query: 183 E 185
E
Sbjct: 216 E 216
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core
protein C)
Length = 158
Score = 100 bits (250), Expect = 9e-22
Identities = 51/105 (48%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Frame = +3
Query: 102 SLKKVLEVPEHRLKNKKIDPKPAKP--TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVE 275
S+ KV++ EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VE
Sbjct: 2 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 61
Query: 276 SVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIINEKQYVLCSKCDV 410
S++LP D KR+ + F++F E K + + V SKC++
Sbjct: 62 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 106
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPA 170
F +G+V + + T RGF F+T E +KK++E H + K + K A
Sbjct: 54 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 109
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 346
Score = 92.4 bits (228), Expect = 3e-19
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKPTK 182
F +G++ C++ T SRGFGFVT S+ KVL P H L +K IDPK A P +
Sbjct: 41 FSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR 100
Query: 183 EP------NKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT 344
KKIFVGGLS + E +K+YF Q+G VE L FD + + + + F++F
Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 160
Query: 345 E 347
E
Sbjct: 161 E 161
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP 176
FE +GKV ++ K T RGFGFVT E ++KV E+ H + NK ++ K A+P
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Score = 37.4 bits (85), Expect = 0.012
Identities = 17/69 (24%), Positives = 41/69 (59%)
Frame = +3
Query: 195 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIIN 374
K+F+GGLS + + +++YFS++G + + D + + + + F++F + A+ + ++
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF-ADPASVDKVLG 80
Query: 375 EKQYVLCSK 401
+ + L SK
Sbjct: 81 QPHHELDSK 89
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 328
Score = 92.4 bits (228), Expect = 3e-19
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKPTK 182
F +G++ C++ T SRGFGFVT S+ KVL P H L +K IDPK A P +
Sbjct: 41 FSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR 100
Query: 183 EP------NKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT 344
KKIFVGGLS + E +K+YF Q+G VE L FD + + + + F++F
Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 160
Query: 345 E 347
E
Sbjct: 161 E 161
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP 176
FE +GKV ++ K T RGFGFVT E ++KV E+ H + NK ++ K A+P
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Score = 37.4 bits (85), Expect = 0.012
Identities = 17/69 (24%), Positives = 41/69 (59%)
Frame = +3
Query: 195 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIIN 374
K+F+GGLS + + +++YFS++G + + D + + + + F++F + A+ + ++
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF-ADPASVDKVLG 80
Query: 375 EKQYVLCSK 401
+ + L SK
Sbjct: 81 QPHHELDSK 89
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 (Musashi-1)
Length = 362
Score = 90.9 bits (224), Expect = 9e-19
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKPTK 182
F +G+V C++ +T SRGFGFVT + + KVL H L +K IDPK A P +
Sbjct: 40 FGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR 99
Query: 183 EP------NKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT 344
KKIFVGGLS + T E +K+YF Q+G V+ L FD + + + + F++F +
Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
Query: 345 E 347
E
Sbjct: 160 E 160
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +3
Query: 3 FETWGKVAHCVIKLYKMTGNSRGFGFVTMHTEHSLKKVLEVPEHRLKNKKIDPKPAKP 176
FE +GKV ++ K T RGFGFVT +E ++KV E+ H + NK ++ K A+P
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/69 (30%), Positives = 41/69 (59%)
Frame = +3
Query: 195 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEYAAKNAIIN 374
K+F+GGLS T+E ++EYF Q+G V+ + D + + + F++F + A + ++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF-MDQAGVDKVLA 79
Query: 375 EKQYVLCSK 401
+ ++ L SK
Sbjct: 80 QSRHELDSK 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,219,774
Number of Sequences: 369166
Number of extensions: 863004
Number of successful extensions: 3645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3547
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)