Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_M01
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprote... 174 2e-43
sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprote... 174 2e-43
sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotei... 174 3e-43
sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein... 174 4e-43
sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotei... 165 2e-40
sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneou... 147 3e-35
sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotei... 132 1e-30
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 132 1e-30
sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotei... 132 1e-30
sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 132 2e-30
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 174 bits (442), Expect = 2e-43
Identities = 82/169 (48%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
+F+GGLSW+TT++DLK+YF +G+V C +KLD +TG SRGFGFV +S+ KV++
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 182 EHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 355
EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D
Sbjct: 159 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 218
Query: 356 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 502
KR+ + F++F E+ K + + +V SKC++++A+ K+Q + +
Sbjct: 219 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267
Score = 48.1 bits (113), Expect = 3e-05
Identities = 23/69 (33%), Positives = 42/69 (60%)
Frame = +2
Query: 248 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 427
K+F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156
Query: 428 EKQDVLGSK 454
+K+ L K
Sbjct: 157 QKEHKLNGK 165
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 174 bits (442), Expect = 2e-43
Identities = 82/169 (48%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
+F+GGLSW+TT++DLK+YF +G+V C +KLD +TG SRGFGFV +S+ KV++
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 182 EHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 355
EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D
Sbjct: 159 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 218
Query: 356 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 502
KR+ + F++F E+ K + + +V SKC++++A+ K+Q + +
Sbjct: 219 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267
Score = 48.1 bits (113), Expect = 3e-05
Identities = 23/69 (33%), Positives = 42/69 (60%)
Frame = +2
Query: 248 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 427
K+F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156
Query: 428 EKQDVLGSK 454
+K+ L K
Sbjct: 157 QKEHKLNGK 165
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
(CArG-binding factor-A) (CBF-A)
Length = 285
Score = 174 bits (441), Expect = 3e-43
Identities = 80/162 (49%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
+FVGGLSW+T+++DLK+YF +G+V C IK+D TG SRGFGF+ S++KVL+
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 182 EHRLKNKKIDPKPAKPTK-EPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSK 358
EHRL + IDPK A K +P KKIFVGGL+P+ TEE+I+EYF Q+G +E+++LP D
Sbjct: 137 EHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKL 196
Query: 359 GKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKD 484
KR+ +VF++F ED K + + V GSKC++++A PK+
Sbjct: 197 NKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +2
Query: 221 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 400
A +E K+FVGGLS D +++ +K+YF+++G V + D + G+ + + F+ F
Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126
Query: 401 DAAKNAIINEKQDVLGSKCDVR--MAVPKDQVNK 496
+ + + ++ + G D + MA+ KD V K
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 160
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 353
Score = 174 bits (440), Expect = 4e-43
Identities = 82/169 (48%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
+F+GGLSW+TT++DLK+YF +G V C +KLD +TG SRGFGFV +S+ KV++
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 156
Query: 182 EHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 355
EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D
Sbjct: 157 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 216
Query: 356 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 502
KR+ + F++F E+ K + + +V SKC++++A+ K+Q + +
Sbjct: 217 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 265
Score = 48.1 bits (113), Expect = 3e-05
Identities = 23/69 (33%), Positives = 42/69 (60%)
Frame = +2
Query: 248 KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 427
K+F+GGLS D T++ +K+YFS++G V L D G+ + + F+ F E + + +++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 154
Query: 428 EKQDVLGSK 454
+K+ L K
Sbjct: 155 QKEHKLNGK 163
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
binding protein 1) (ABBP-1)
Length = 331
Score = 165 bits (417), Expect = 2e-40
Identities = 78/163 (47%), Positives = 115/163 (70%), Gaps = 2/163 (1%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
+FVGGLSW+T+++DLK+YF +G+V C IK+D TG SRGFGF+ S++KVL+
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 129
Query: 182 EHRLKNKKIDPKPAKP-TKEPNKKIFVGGLSPD-VTEEQIKEYFSQYGSVESVDLPFDTS 355
EHRL + IDPK A K+P KKIFVGGL+P+ TEE+I+EYF ++G +E+++LP D
Sbjct: 130 EHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPK 189
Query: 356 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKD 484
KR+ +VF++F E+ K + + V GSKC++++A PK+
Sbjct: 190 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 232
Score = 51.2 bits (121), Expect = 4e-06
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = +2
Query: 179 PEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSK 358
P ++ D A +E K+FVGGLS D +++ +K+YF+++G V + D +
Sbjct: 46 PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105
Query: 359 GKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVR--MAVPKDQVNK 496
G+ + + F+ F + + + ++ + G D + MA+ KD V K
Sbjct: 106 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 153
>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
40) (HNRNP 40)
Length = 344
Score = 147 bits (372), Expect = 3e-35
Identities = 67/162 (41%), Positives = 106/162 (65%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
LFVGGLSWETTE++L+++F +G++ +K D TG SRGF F+ +++ KV
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 182 EHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKG 361
EH + +KK+DPK AK + KIFVGGL+ ++++E+IK YF Q+G++ V++PFD K
Sbjct: 118 EHIINSKKVDPKKAKAR---HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKS 174
Query: 362 KRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQ 487
+RK + F++F +E + + KQ + G + DV+ A PK +
Sbjct: 175 QRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 58.2 bits (139), Expect = 3e-08
Identities = 24/84 (28%), Positives = 50/84 (59%)
Frame = +2
Query: 221 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 400
A ++ ++K+FVGGLS + TE++++++F +YG +ES+++ D G+ + + F+ FT
Sbjct: 48 ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107
Query: 401 DAAKNAIINEKQDVLGSKCDVRMA 472
+A ++ + K D + A
Sbjct: 108 EAIDKVSAADEHIINSKKVDPKKA 131
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (Unwinding protein 1) (UP1)
Length = 195
Score = 132 bits (333), Expect = 1e-30
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
LF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74
Query: 182 EHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVESVD 337
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E ++
Sbjct: 75 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134
Query: 338 LPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 490
+ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 135 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 185
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 233 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 397
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66
Query: 398 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 496
DAA NA K D R+ PK V++
Sbjct: 67 VDAAMNA--------RPHKVDGRVVEPKRAVSR 91
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
Length = 320
Score = 132 bits (333), Expect = 1e-30
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
LF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 182 EHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVESVD 337
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E ++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 338 LPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 490
+ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 233 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 397
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 398 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 496
DAA NA K D R+ PK V++
Sbjct: 68 VDAAMNA--------RPHKVDGRVVEPKRAVSR 92
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 372
Score = 132 bits (333), Expect = 1e-30
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
LF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 182 EHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVESVD 337
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E ++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 338 LPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 490
+ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 233 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 397
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 398 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 496
DAA NA K D R+ PK V++
Sbjct: 68 VDAAMNA--------RPHKVDGRVVEPKRAVSR 92
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP)
Length = 320
Score = 132 bits (331), Expect = 2e-30
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Frame = +2
Query: 2 LFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEVP 181
LF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 182 EHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVESVD 337
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E ++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 338 LPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 490
+ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 233 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 397
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 398 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 496
DAA NA K D R+ PK V++
Sbjct: 68 VDAAMNA--------RPHKVDGRVVEPKRAVSR 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,242,833
Number of Sequences: 369166
Number of extensions: 1658499
Number of successful extensions: 5815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5619
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)