Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D06
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprote... 176 6e-44
sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprote... 176 6e-44
sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotei... 176 7e-44
sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein... 176 1e-43
sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotei... 167 5e-41
sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneou... 151 2e-36
sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotei... 136 7e-32
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 136 7e-32
sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotei... 136 7e-32
sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 135 1e-31
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 176 bits (447), Expect = 6e-44
Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
Frame = +2
Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
K+F+GGLSW+TT++DLK+YF +G+V C +KLD +TG SRGFGFV +S+ KV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 377 PEHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDT 550
EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 700
KR+ + F++F E+ K + + +V SKC++++A+ K+Q + +
Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267
Score = 60.1 bits (144), Expect = 8e-09
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
+K+FVGGLS +T EE ++ YF +G+V + +D T RGF F+T E+ +KK++E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 374 VPEHRLKNKKIDPKPA 421
H + K + K A
Sbjct: 242 KKYHNVGLSKCEIKVA 257
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 176 bits (447), Expect = 6e-44
Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
Frame = +2
Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
K+F+GGLSW+TT++DLK+YF +G+V C +KLD +TG SRGFGFV +S+ KV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 377 PEHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDT 550
EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217
Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 700
KR+ + F++F E+ K + + +V SKC++++A+ K+Q + +
Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267
Score = 60.1 bits (144), Expect = 8e-09
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
+K+FVGGLS +T EE ++ YF +G+V + +D T RGF F+T E+ +KK++E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 374 VPEHRLKNKKIDPKPA 421
H + K + K A
Sbjct: 242 KKYHNVGLSKCEIKVA 257
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
(CArG-binding factor-A) (CBF-A)
Length = 285
Score = 176 bits (446), Expect = 7e-44
Identities = 81/163 (49%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Frame = +2
Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
K+FVGGLSW+T+++DLK+YF +G+V C IK+D TG SRGFGF+ S++KVL+
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 377 PEHRLKNKKIDPKPAKPTK-EPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 553
EHRL + IDPK A K +P KKIFVGGL+P+ TEE+I+EYF Q+G +E+++LP D
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPK 195
Query: 554 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKD 682
KR+ +VF++F ED K + + V GSKC++++A PK+
Sbjct: 196 LNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238
Score = 64.3 bits (155), Expect = 4e-10
Identities = 31/78 (39%), Positives = 46/78 (58%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
+K+FVGGL+ E TEE ++ YF +G++ + +D RGF F+T ED +KKVLE
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 374 VPEHRLKNKKIDPKPAKP 427
H + K + K A+P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +2
Query: 419 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 598
A +E K+FVGGLS D +++ +K+YF+++G V + D + G+ + + F+ F
Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126
Query: 599 DAAKNAIINEKQDVLGSKCDVR--MAVPKDQVNK 694
+ + + ++ + G D + MA+ KD V K
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 160
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 353
Score = 176 bits (445), Expect = 1e-43
Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 2/170 (1%)
Frame = +2
Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
K+F+GGLSW+TT++DLK+YF +G V C +KLD +TG SRGFGFV +S+ KV++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 377 PEHRLKNKKIDPKPAK--PTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDT 550
EH+L K IDPK AK TKEP KKIFVGGLSPD EE+I+EYF +G VES++LP D
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 215
Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNKNK 700
KR+ + F++F E+ K + + +V SKC++++A+ K+Q + +
Sbjct: 216 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 265
Score = 60.1 bits (144), Expect = 8e-09
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
+K+FVGGLS +T EE ++ YF +G+V + +D T RGF F+T E+ +KK++E
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 374 VPEHRLKNKKIDPKPA 421
H + K + K A
Sbjct: 240 KKYHNVGLSKCEIKVA 255
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
binding protein 1) (ABBP-1)
Length = 331
Score = 167 bits (422), Expect = 5e-41
Identities = 79/164 (48%), Positives = 116/164 (70%), Gaps = 2/164 (1%)
Frame = +2
Query: 197 KLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLEV 376
K+FVGGLSW+T+++DLK+YF +G+V C IK+D TG SRGFGF+ S++KVL+
Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128
Query: 377 PEHRLKNKKIDPKPAKP-TKEPNKKIFVGGLSPD-VTEEQIKEYFSQYGSVESVDLPFDT 550
EHRL + IDPK A K+P KKIFVGGL+P+ TEE+I+EYF ++G +E+++LP D
Sbjct: 129 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDP 188
Query: 551 SKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKD 682
KR+ +VF++F E+ K + + V GSKC++++A PK+
Sbjct: 189 KLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 232
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 194 RKLFVGGLSWET-TEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVL 370
+K+FVGGL+ E+ TEE ++ YF +G++ + +D RGF F+T E+ +KKVL
Sbjct: 152 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 211
Query: 371 EVPEHRLKNKKIDPKPAKP 427
E H + K + K A+P
Sbjct: 212 EKKFHTVSGSKCEIKVAQP 230
Score = 51.2 bits (121), Expect = 4e-06
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = +2
Query: 377 PEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSK 556
P ++ D A +E K+FVGGLS D +++ +K+YF+++G V + D +
Sbjct: 46 PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105
Query: 557 GKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVR--MAVPKDQVNK 694
G+ + + F+ F + + + ++ + G D + MA+ KD V K
Sbjct: 106 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKK 153
>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
40) (HNRNP 40)
Length = 344
Score = 151 bits (382), Expect = 2e-36
Identities = 69/164 (42%), Positives = 108/164 (65%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
RKLFVGGLSWETTE++L+++F +G++ +K D TG SRGF F+ +++ KV
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 374 VPEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTS 553
EH + +KK+DPK AK + KIFVGGL+ ++++E+IK YF Q+G++ V++PFD
Sbjct: 116 ADEHIINSKKVDPKKAKAR---HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQ 172
Query: 554 KGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQ 685
K +RK + F++F +E + + KQ + G + DV+ A PK +
Sbjct: 173 KSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 58.2 bits (139), Expect = 3e-08
Identities = 24/84 (28%), Positives = 50/84 (59%)
Frame = +2
Query: 419 AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 598
A ++ ++K+FVGGLS + TE++++++F +YG +ES+++ D G+ + + F+ FT
Sbjct: 48 ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107
Query: 599 DAAKNAIINEKQDVLGSKCDVRMA 670
+A ++ + K D + A
Sbjct: 108 EAIDKVSAADEHIINSKKVDPKKA 131
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (Unwinding protein 1) (UP1)
Length = 195
Score = 136 bits (343), Expect = 7e-32
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
RKLF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 132
Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
+++ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 133 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 185
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66
Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
DAA NA K D R+ PK V++
Sbjct: 67 VDAAMNA--------RPHKVDGRVVEPKRAVSR 91
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
Length = 320
Score = 136 bits (343), Expect = 7e-32
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
RKLF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
+++ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
DAA NA K D R+ PK V++
Sbjct: 68 VDAAMNA--------RPHKVDGRVVEPKRAVSR 92
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 372
Score = 136 bits (343), Expect = 7e-32
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
RKLF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
+++ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
DAA NA K D R+ PK V++
Sbjct: 68 VDAAMNA--------RPHKVDGRVVEPKRAVSR 92
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP)
Length = 320
Score = 135 bits (341), Expect = 1e-31
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +2
Query: 194 RKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFVTMDTEDSLKKVLE 373
RKLF+GGLS+ETT+E L+++FE WG + CV+ D T SRGFGFVT T + + +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 374 VPEHRLKNKKIDPKPAKPTKEPN--------KKIFVGGLSPDVTEEQIKEYFSQYGSVES 529
H++ + ++PK A ++ KKIFVGG+ D E +++YF QYG +E
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 530 VDLPFDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKCDVRMAVPKDQV 688
+++ D GK++ + F++F D+ +I + V G C+VR A+ K ++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Frame = +2
Query: 431 KEPN--KKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTT--- 595
KEP +K+F+GGLS + T+E ++ +F Q+G++ + D + + + + F+++ T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 596 EDAAKNAIINEKQDVLGSKCDVRMAVPKDQVNK 694
DAA NA K D R+ PK V++
Sbjct: 68 VDAAMNA--------RPHKVDGRVVEPKRAVSR 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,264,401
Number of Sequences: 369166
Number of extensions: 1662931
Number of successful extensions: 6263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6036
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)