Planaria EST Database

DrC_00832

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00832
         (936 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05974|RAB1A_LYMST  Ras-related protein Rab-1A                 332   9e-91
sp|Q9D1G1|RAB1B_MOUSE  Ras-related protein Rab-1B                 330   5e-90
sp|Q9H0U4|RAB1B_HUMAN  Ras-related protein Rab-1B                 328   1e-89
sp|P10536|RAB1B_RAT  Ras-related protein Rab-1B                   326   5e-89
sp|P11620|YPT1_SCHPO  Ras-related protein ypt1                    322   1e-87
sp|P62820|RAB1A_HUMAN  Ras-related protein Rab-1A (YPT1-rela...   320   3e-87
sp|Q52NJ2|RAB1A_PIG  Ras-related protein Rab-1A                   320   4e-87
sp|P22125|RAB1_DISOM  Ras-related protein ORAB-1                  320   5e-87
sp|P33723|YPT1_NEUCR  GTP-binding protein ypt1                    311   1e-84
sp|Q39571|YPTC1_CHLRE  GTP-binding protein YPTC1                  307   3e-83

>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
          Length = 205

 Score =  332 bits (851), Expect = 9e-91
 Identities = 160/202 (79%), Positives = 180/202 (89%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNP+YDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 4   MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NKSD+ +KKVVD  TAKE+AD L IPFLETSA+++TNVE+ F+TMA EIKNR+GP  AAS
Sbjct: 124 NKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAAS 183

Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
           + +PSV++  +T       GCC
Sbjct: 184 DSKPSVKINSSTPVSANKGGCC 205

>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
          Length = 201

 Score =  330 bits (845), Expect = 5e-90
 Identities = 159/202 (78%), Positives = 184/202 (91%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI+RYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TMA EIK R+GP AA+ 
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
            +RP++++   + P+KP+SG C
Sbjct: 181 GERPNLKID--STPVKPASGGC 200

>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
          Length = 201

 Score =  328 bits (842), Expect = 1e-89
 Identities = 159/202 (78%), Positives = 183/202 (90%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI+RYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NKSD+ +KKVVD+ TAKEFADSL IPFLETSA+++TNVE+ F+TMA EIK R+GP AA+ 
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
            +RP++++   + P+KP+ G C
Sbjct: 181 GERPNLKID--STPVKPAGGGC 200

>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
          Length = 201

 Score =  326 bits (836), Expect = 5e-89
 Identities = 157/202 (77%), Positives = 183/202 (90%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI+RYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TMA EIK R+GP AA+ 
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
            +RP++++   + P+K +SG C
Sbjct: 181 GERPNLKID--STPVKSASGGC 200

>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
          Length = 203

 Score =  322 bits (825), Expect = 1e-87
 Identities = 160/203 (78%), Positives = 178/203 (87%), Gaps = 1/203 (0%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRT EL+GKTVKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVK WL EI+RYA E VN+LLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLG-PAAAA 554
           NKSDMV KKVV+   AKEFADSLNIPFLETSA+DSTNVE+ F+TM+++IK R+G    A+
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180

Query: 555 SNQRPSVRVGGATKPIKPSSGCC 623
           SN + SV+VG  T   + SS CC
Sbjct: 181 SNAKSSVKVGQGTNVSQSSSNCC 203

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
 sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
 sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
 sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
          Length = 205

 Score =  320 bits (821), Expect = 3e-87
 Identities = 160/203 (78%), Positives = 177/203 (87%)
 Frame = +3

Query: 15  AMNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKL 194
           +MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KL
Sbjct: 3   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62

Query: 195 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLV 374
           QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLV
Sbjct: 63  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 122

Query: 375 GNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAA 554
           GNK D+ +KKVVD  TAKEFADSL IPFLETSA+++TNVE++F+TMA EIK R+GP A A
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182

Query: 555 SNQRPSVRVGGATKPIKPSSGCC 623
                S  V   + P+K S G C
Sbjct: 183 GGAEKS-NVKIQSTPVKQSGGGC 204

>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
          Length = 205

 Score =  320 bits (820), Expect = 4e-87
 Identities = 160/203 (78%), Positives = 177/203 (87%)
 Frame = +3

Query: 15  AMNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKL 194
           +MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KL
Sbjct: 3   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62

Query: 195 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLV 374
           QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLV
Sbjct: 63  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLV 122

Query: 375 GNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAA 554
           GNK D+ +KKVVD  TAKEFADSL IPFLETSA+++TNVE++F+TMA EIK R+GP A A
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182

Query: 555 SNQRPSVRVGGATKPIKPSSGCC 623
                S  V   + P+K S G C
Sbjct: 183 GGAEKS-NVKIQSTPVKQSGGGC 204

>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
          Length = 202

 Score =  320 bits (819), Expect = 5e-87
 Identities = 159/202 (78%), Positives = 175/202 (86%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NK D+ +KKVVD  TAKEFADSL IPFLETSA+++TNVE+ F+TMA EIK R+GP A + 
Sbjct: 121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSG 180

Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
               S  V   + P+K S G C
Sbjct: 181 GSEKS-NVNIQSTPVKSSGGGC 201

>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1
          Length = 203

 Score =  311 bits (798), Expect = 1e-84
 Identities = 156/203 (76%), Positives = 172/203 (84%), Gaps = 1/203 (0%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKTVKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGI VVYDVTD  SFNNVK WL EI+RYA E VNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NKSDM  KKVV+   AKEFADSL IPFLETSA++++NVE+ F+TMA++IK R+G + A +
Sbjct: 121 NKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATN 180

Query: 558 NQRPSVRVG-GATKPIKPSSGCC 623
           N + SV V  G       S GCC
Sbjct: 181 NTKASVNVSPGHGVSNNSSGGCC 203

>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
          Length = 203

 Score =  307 bits (786), Expect = 3e-83
 Identities = 154/203 (75%), Positives = 170/203 (83%), Gaps = 1/203 (0%)
 Frame = +3

Query: 18  MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
           MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRT+ELDGK +KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60

Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WLNEI+RYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
           NKSD+ SKKVV+   AK FAD + IPFLETSA+++TNVE+ F+TMA EIKNR+      +
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180

Query: 558 NQRPSVRVGGATKPI-KPSSGCC 623
                V      KPI   SS CC
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSCC 203

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,674,645
Number of Sequences: 369166
Number of extensions: 2149074
Number of successful extensions: 7215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6791
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00832

  1. Dr_sW_021_C24
  2. Dr_sW_026_G09
  3. Dr_sW_001_A21