Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G09
(562 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 243 3e-64
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 239 3e-63
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 238 8e-63
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 236 4e-62
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 231 7e-61
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 229 3e-60
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 229 4e-60
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 229 4e-60
sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 221 1e-57
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 216 2e-56
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 243 bits (619), Expect = 3e-64
Identities = 117/156 (75%), Positives = 134/156 (85%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI
Sbjct: 50 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 109
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNKSD+ +KKVVD TAKE+AD L IPFLETSA+++TNVE+ F+TMA
Sbjct: 110 DRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMA 169
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIKNR+GP AAS+ +PSV++ +T GCC
Sbjct: 170 AEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 239 bits (610), Expect = 3e-63
Identities = 115/156 (73%), Positives = 138/156 (88%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI
Sbjct: 47 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TMA
Sbjct: 107 DRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMA 166
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIK R+GP AA+ +RP++++ + P+KP+SG C
Sbjct: 167 AEIKKRMGPGAASGGERPNLKID--STPVKPASGGC 200
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 238 bits (607), Expect = 8e-63
Identities = 115/156 (73%), Positives = 137/156 (87%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI
Sbjct: 47 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNKSD+ +KKVVD+ TAKEFADSL IPFLETSA+++TNVE+ F+TMA
Sbjct: 107 DRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA 166
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIK R+GP AA+ +RP++++ + P+KP+ G C
Sbjct: 167 AEIKKRMGPGAASGGERPNLKID--STPVKPAGGGC 200
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 236 bits (601), Expect = 4e-62
Identities = 113/156 (72%), Positives = 137/156 (87%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI
Sbjct: 47 IRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TMA
Sbjct: 107 DRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMA 166
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIK R+GP AA+ +RP++++ + P+K +SG C
Sbjct: 167 AEIKKRMGPGAASGGERPNLKID--STPVKSASGGC 200
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 231 bits (590), Expect = 7e-61
Identities = 116/157 (73%), Positives = 132/157 (84%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRT EL+GKTVKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVK WL EI
Sbjct: 47 IRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA E VN+LLVGNKSDMV KKVV+ AKEFADSLNIPFLETSA+DSTNVE+ F+TM+
Sbjct: 107 DRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMS 166
Query: 361 QEIKNRLG-PAAAASNQRPSVRVGGATKPIKPSSGCC 468
++IK R+G A+SN + SV+VG T + SS CC
Sbjct: 167 RQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 229 bits (585), Expect = 3e-60
Identities = 116/156 (74%), Positives = 130/156 (83%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI
Sbjct: 50 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 109
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE++F+TMA
Sbjct: 110 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 169
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIK R+GP A A S V + P+K S G C
Sbjct: 170 AEIKKRMGPGATAGGAEKS-NVKIQSTPVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 229 bits (584), Expect = 4e-60
Identities = 116/156 (74%), Positives = 130/156 (83%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI
Sbjct: 50 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEI 109
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE++F+TMA
Sbjct: 110 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 169
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIK R+GP A A S V + P+K S G C
Sbjct: 170 AEIKKRMGPGATAGGAEKS-NVKIQSTPVKQSGGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 229 bits (584), Expect = 4e-60
Identities = 115/156 (73%), Positives = 129/156 (82%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI
Sbjct: 47 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE+ F+TMA
Sbjct: 107 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA 166
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 468
EIK R+GP A + S V + P+K S G C
Sbjct: 167 AEIKKRMGPGATSGGSEKS-NVNIQSTPVKSSGGGC 201
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1
Length = 203
Score = 221 bits (563), Expect = 1e-57
Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI VVYDVTD SFNNVK WL EI
Sbjct: 47 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA E VNKLLVGNKSDM KKVV+ AKEFADSL IPFLETSA++++NVE+ F+TMA
Sbjct: 107 DRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMA 166
Query: 361 QEIKNRLGPAAAASNQRPSVRVG-GATKPIKPSSGCC 468
++IK R+G + A +N + SV V G S GCC
Sbjct: 167 RQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 216 bits (551), Expect = 2e-56
Identities = 110/157 (70%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEI 180
IRT+ELDGK +KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WLNEI
Sbjct: 47 IRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI 106
Query: 181 ERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMA 360
+RYA+ENVNKLLVGNKSD+ SKKVV+ AK FAD + IPFLETSA+++TNVE+ F+TMA
Sbjct: 107 DRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMA 166
Query: 361 QEIKNRLGPAAAASNQRPSVRVGGATKPI-KPSSGCC 468
EIKNR+ + V KPI SS CC
Sbjct: 167 AEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,536,642
Number of Sequences: 369166
Number of extensions: 1239156
Number of successful extensions: 4070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3889
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)