Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A21
(794 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 243 3e-64
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 240 4e-63
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 239 8e-63
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 236 4e-62
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 232 8e-61
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 230 3e-60
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 230 4e-60
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 230 4e-60
sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 222 1e-57
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 217 3e-56
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 243 bits (621), Expect = 3e-64
Identities = 117/157 (74%), Positives = 135/157 (85%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL E
Sbjct: 49 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 108
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNKSD+ +KKVVD TAKE+AD L IPFLETSA+++TNVE+ F+TM
Sbjct: 109 IDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTM 168
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIKNR+GP AAS+ +PSV++ +T GCC
Sbjct: 169 AAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 240 bits (612), Expect = 4e-63
Identities = 115/157 (73%), Positives = 139/157 (88%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL E
Sbjct: 46 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TM
Sbjct: 106 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTM 165
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIK R+GP AA+ +RP++++ + P+KP+SG C
Sbjct: 166 AAEIKKRMGPGAASGGERPNLKID--STPVKPASGGC 200
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 239 bits (609), Expect = 8e-63
Identities = 115/157 (73%), Positives = 138/157 (87%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL E
Sbjct: 46 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNKSD+ +KKVVD+ TAKEFADSL IPFLETSA+++TNVE+ F+TM
Sbjct: 106 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 165
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIK R+GP AA+ +RP++++ + P+KP+ G C
Sbjct: 166 AAEIKKRMGPGAASGGERPNLKID--STPVKPAGGGC 200
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 236 bits (603), Expect = 4e-62
Identities = 113/157 (71%), Positives = 138/157 (87%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQ S+ NVK WL E
Sbjct: 46 KIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TM
Sbjct: 106 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTM 165
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIK R+GP AA+ +RP++++ + P+K +SG C
Sbjct: 166 AAEIKKRMGPGAASGGERPNLKID--STPVKSASGGC 200
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 232 bits (592), Expect = 8e-61
Identities = 116/158 (73%), Positives = 133/158 (84%), Gaps = 1/158 (0%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRT EL+GKTVKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVK WL E
Sbjct: 46 KIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA E VN+LLVGNKSDMV KKVV+ AKEFADSLNIPFLETSA+DSTNVE+ F+TM
Sbjct: 106 IDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTM 165
Query: 371 AQEIKNRLG-PAAAASNQRPSVRVGGATKPIKPSSGCC 481
+++IK R+G A+SN + SV+VG T + SS CC
Sbjct: 166 SRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 230 bits (587), Expect = 3e-60
Identities = 116/157 (73%), Positives = 131/157 (83%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL E
Sbjct: 49 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 108
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE++F+TM
Sbjct: 109 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 168
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIK R+GP A A S V + P+K S G C
Sbjct: 169 AAEIKKRMGPGATAGGAEKS-NVKIQSTPVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 230 bits (586), Expect = 4e-60
Identities = 116/157 (73%), Positives = 131/157 (83%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL E
Sbjct: 49 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQE 108
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE++F+TM
Sbjct: 109 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 168
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIK R+GP A A S V + P+K S G C
Sbjct: 169 AAEIKKRMGPGATAGGAEKS-NVKIQSTPVKQSGGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 230 bits (586), Expect = 4e-60
Identities = 115/157 (73%), Positives = 130/157 (82%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL E
Sbjct: 46 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE+ F+TM
Sbjct: 106 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 165
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPIKPSSGCC 481
A EIK R+GP A + S V + P+K S G C
Sbjct: 166 AAEIKKRMGPGATSGGSEKS-NVNIQSTPVKSSGGGC 201
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1
Length = 203
Score = 222 bits (565), Expect = 1e-57
Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI VVYDVTD SFNNVK WL E
Sbjct: 46 KIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA E VNKLLVGNKSDM KKVV+ AKEFADSL IPFLETSA++++NVE+ F+TM
Sbjct: 106 IDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTM 165
Query: 371 AQEIKNRLGPAAAASNQRPSVRVG-GATKPIKPSSGCC 481
A++IK R+G + A +N + SV V G S GCC
Sbjct: 166 ARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 217 bits (553), Expect = 3e-56
Identities = 110/158 (69%), Positives = 125/158 (79%), Gaps = 1/158 (0%)
Frame = +2
Query: 11 RIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNE 190
+IRT+ELDGK +KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WLNE
Sbjct: 46 KIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE 105
Query: 191 IERYANENVNKLLVGNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITM 370
I+RYA+ENVNKLLVGNKSD+ SKKVV+ AK FAD + IPFLETSA+++TNVE+ F+TM
Sbjct: 106 IDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTM 165
Query: 371 AQEIKNRLGPAAAASNQRPSVRVGGATKPI-KPSSGCC 481
A EIKNR+ + V KPI SS CC
Sbjct: 166 AAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,049,614
Number of Sequences: 369166
Number of extensions: 1797792
Number of successful extensions: 5448
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5265
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)