Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C24
(686 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 332 6e-91
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 330 3e-90
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 328 6e-90
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 326 3e-89
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 322 6e-88
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 320 2e-87
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 320 2e-87
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 320 3e-87
sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 311 8e-85
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 307 2e-83
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 332 bits (851), Expect = 6e-91
Identities = 160/202 (79%), Positives = 180/202 (89%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNP+YDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 4 MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NKSD+ +KKVVD TAKE+AD L IPFLETSA+++TNVE+ F+TMA EIKNR+GP AAS
Sbjct: 124 NKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAAS 183
Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
+ +PSV++ +T GCC
Sbjct: 184 DSKPSVKINSSTPVSANKGGCC 205
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 330 bits (845), Expect = 3e-90
Identities = 159/202 (78%), Positives = 184/202 (91%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI+RYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TMA EIK R+GP AA+
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
+RP++++ + P+KP+SG C
Sbjct: 181 GERPNLKID--STPVKPASGGC 200
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 328 bits (842), Expect = 6e-90
Identities = 159/202 (78%), Positives = 183/202 (90%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI+RYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NKSD+ +KKVVD+ TAKEFADSL IPFLETSA+++TNVE+ F+TMA EIK R+GP AA+
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
+RP++++ + P+KP+ G C
Sbjct: 181 GERPNLKID--STPVKPAGGGC 200
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 326 bits (836), Expect = 3e-89
Identities = 157/202 (77%), Positives = 183/202 (90%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQ S+ NVK WL EI+RYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NKSD+ +KKVVD+ TAKEFADSL +PFLETSA+++TNVE+ F+TMA EIK R+GP AA+
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
+RP++++ + P+K +SG C
Sbjct: 181 GERPNLKID--STPVKSASGGC 200
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 322 bits (825), Expect = 6e-88
Identities = 160/203 (78%), Positives = 178/203 (87%), Gaps = 1/203 (0%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRT EL+GKTVKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVK WL EI+RYA E VN+LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLG-PAAAA 554
NKSDMV KKVV+ AKEFADSLNIPFLETSA+DSTNVE+ F+TM+++IK R+G A+
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180
Query: 555 SNQRPSVRVGGATKPIKPSSGCC 623
SN + SV+VG T + SS CC
Sbjct: 181 SNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 320 bits (821), Expect = 2e-87
Identities = 160/203 (78%), Positives = 177/203 (87%)
Frame = +3
Query: 15 AMNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKL 194
+MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KL
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62
Query: 195 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLV 374
QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLV
Sbjct: 63 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 122
Query: 375 GNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAA 554
GNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE++F+TMA EIK R+GP A A
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182
Query: 555 SNQRPSVRVGGATKPIKPSSGCC 623
S V + P+K S G C
Sbjct: 183 GGAEKS-NVKIQSTPVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 320 bits (820), Expect = 2e-87
Identities = 160/203 (78%), Positives = 177/203 (87%)
Frame = +3
Query: 15 AMNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKL 194
+MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KL
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62
Query: 195 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLV 374
QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLV
Sbjct: 63 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLV 122
Query: 375 GNKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAA 554
GNK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE++F+TMA EIK R+GP A A
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182
Query: 555 SNQRPSVRVGGATKPIKPSSGCC 623
S V + P+K S G C
Sbjct: 183 GGAEKS-NVKIQSTPVKQSGGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 320 bits (819), Expect = 3e-87
Identities = 159/202 (78%), Positives = 175/202 (86%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EI+RYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NK D+ +KKVVD TAKEFADSL IPFLETSA+++TNVE+ F+TMA EIK R+GP A +
Sbjct: 121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSG 180
Query: 558 NQRPSVRVGGATKPIKPSSGCC 623
S V + P+K S G C
Sbjct: 181 GSEKS-NVNIQSTPVKSSGGGC 201
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1
Length = 203
Score = 311 bits (798), Expect = 8e-85
Identities = 156/203 (76%), Positives = 172/203 (84%), Gaps = 1/203 (0%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRTIELDGKTVKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGI VVYDVTD SFNNVK WL EI+RYA E VNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NKSDM KKVV+ AKEFADSL IPFLETSA++++NVE+ F+TMA++IK R+G + A +
Sbjct: 121 NKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATN 180
Query: 558 NQRPSVRVG-GATKPIKPSSGCC 623
N + SV V G S GCC
Sbjct: 181 NTKASVNVSPGHGVSNNSSGGCC 203
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 307 bits (786), Expect = 2e-83
Identities = 154/203 (75%), Positives = 170/203 (83%), Gaps = 1/203 (0%)
Frame = +3
Query: 18 MNPEYDYLFKLLLIGDSGVGKSCILLRFADDTYTDSYISTIGVDFKIRTIELDGKTVKLQ 197
MNPEYDYLFKLLLIGDSGVGKSC+LLRFADDTYT+SYISTIGVDFKIRT+ELDGK +KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60
Query: 198 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQTSFNNVKNWLNEIERYANENVNKLLVG 377
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WLNEI+RYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 378 NKSDMVSKKVVDSGTAKEFADSLNIPFLETSARDSTNVEKTFITMAQEIKNRLGPAAAAS 557
NKSD+ SKKVV+ AK FAD + IPFLETSA+++TNVE+ F+TMA EIKNR+ +
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180
Query: 558 NQRPSVRVGGATKPI-KPSSGCC 623
V KPI SS CC
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSCC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,283,511
Number of Sequences: 369166
Number of extensions: 1592538
Number of successful extensions: 5974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5552
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)