Planaria EST Database


DrC_00784

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00784
         (892 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15398|DLG7_HUMAN  Discs large homolog 7 (Hepatoma up-reg...    37   0.057
sp|P36721|VE1_HPV14  Replication protein E1                        33   1.4  
sp|Q820M7|SYL_NITEU  Leucyl-tRNA synthetase (Leucine--tRNA l...    32   2.4  
sp|P50758|VE1_HPV20  Replication protein E1                        32   2.4  
sp|O40619|VE1_HPVR7  Replication protein E1                        32   2.4  
sp|Q02049|VE1_HPV25  Replication protein E1                        31   5.3  
sp|Q9SMH3|DYH1A_CHLRE  Dynein 1-alpha heavy chain, flagellar...    31   5.3  
sp|P32833|ORC2_YEAST  Origin recognition complex subunit 2 (...    30   9.0  
sp|Q9US07|ARP8_SCHPO  Probable actin-related protein 8             30   9.0  
>sp|Q15398|DLG7_HUMAN Discs large homolog 7 (Hepatoma up-regulated protein) (HURP)
          Length = 846

 Score = 37.4 bits (85), Expect = 0.057
 Identities = 32/93 (34%), Positives = 45/93 (48%)
 Frame = -1

Query: 658 KVFLVTSESLKNPLMPG*LLAQSR*AALINVIS**VCFDTYVGCGLTGPFTEFDCLHSST 479
           KV  ++SE +  PL+ G +      A  IN        D   G  L    T  D L SS 
Sbjct: 715 KVDCLSSERMSLPLLAGGV------ADDINTNKKEGISDVVEGMELNSSITSQDVLMSSP 768

Query: 478 IKSSRASQNSLLINGPVNVSEQMLFDSKHASTK 380
            K++ ASQNS+L  G   +S+  LFD+K  +T+
Sbjct: 769 EKNT-ASQNSILEEGETKISQSELFDNKSLTTE 800
>sp|P36721|VE1_HPV14 Replication protein E1
          Length = 605

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
 Frame = -1

Query: 544 DTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK----- 380
           DTY+  GL G +   DC H + I++      +LL+   +NV  ++ +   H+  K     
Sbjct: 489 DTYLRNGLDGHYVSLDCKHKAPIQTKFP---ALLLTSNINVHNEITYRYLHSRIKGFEFP 545

Query: 379 ----MASDNRFTFE 350
               M +DN   FE
Sbjct: 546 NPFPMKADNTPEFE 559
>sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
          Length = 869

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 458 GCPAGFNCGRMQAIELSKWpreSASDIRVETDSLRYYIDQGRLSALC--QQLSWHQWILQ 631
           G PA  N    + +  +KW  ++ + +R +  SL + ID  R  A C  Q   W+QW+  
Sbjct: 83  GLPAE-NAAIQKGVPPAKWTYDNIAYMRSQLQSLGFAIDWQRELATCDPQYYRWNQWLFL 141

Query: 632 R 634
           R
Sbjct: 142 R 142
>sp|P50758|VE1_HPV20 Replication protein E1
          Length = 605

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 553 VCFDTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK 380
           V  DTY+  GL G +   DC H + I++      +LL+   +NV  ++ +   H+  K
Sbjct: 486 VYMDTYLRNGLDGHYVSLDCKHKAPIQTKFP---ALLLTSNINVHNEVNYRYLHSRIK 540
>sp|O40619|VE1_HPVR7 Replication protein E1
          Length = 606

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
 Frame = -1

Query: 544 DTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK----- 380
           DTY+  GL G F   DC + + +++       LL+   +NV E+  +   H+  K     
Sbjct: 488 DTYLRNGLDGHFVSLDCKYKAPVQTKFL---PLLLTSNINVHEETNYRYLHSRIKGFEFP 544

Query: 379 ----MASDNRFTFE 350
               M SDN   FE
Sbjct: 545 NPFPMKSDNTPQFE 558
>sp|Q02049|VE1_HPV25 Replication protein E1
          Length = 604

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 553 VCFDTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK 380
           V  DTY+  GL G +   DC H + +++      +LL+   +NV  ++ +   H+  K
Sbjct: 485 VYMDTYLRNGLDGHYVSLDCKHKAPMQTKFP---ALLLTSNINVHNEVNYRYLHSRIK 539
>sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner arm I1 complex (1-alpha
            DHC) (Dynein 1, subspecies f)
          Length = 4625

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 111  HQCLVSEKIDVTSTVNDWVTRCGQ-YISSRNLSRNEVIFEWLN 236
            H  L+ E  D+       ++RCG  Y+ SRNL     I+ WLN
Sbjct: 2355 HCKLLFEVFDLQYASPATISRCGMVYVDSRNLGYKPYIYTWLN 2397
>sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 (Origin recognition complex
           protein 71 kDa subunit)
          Length = 620

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 391 ASTKMASDNRFTFEAE*DARKISRANATNKSLMSIA 284
           + TK AS    TFE   D RKI R NA ++  MS+A
Sbjct: 231 SETKSASSFLDTFEGYFDQRKIVRTNAKSRHTMSMA 266
>sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8
          Length = 620

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +3

Query: 516 PVSPHPTYVSKQTHYDITLIKAAYLLCANNYPGI-------SGFFRDSD-VTKKTLLKEC 671
           P  P   +  +  H D+   K A+LL  N YP         SG F +SD  + + LL + 
Sbjct: 163 PEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPIKSGVFNESDYASSQQLLADI 222

Query: 672 FRVLRSNI 695
           + + + +I
Sbjct: 223 YEIFKYSI 230
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,676,949
Number of Sequences: 369166
Number of extensions: 2117862
Number of successful extensions: 5713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5712
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00784

  1. Dr_sW_020_E15
  2. Dr_sW_027_M17
  3. Dr_sW_016_N18