Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N18
(440 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA l... 32 0.61
sp|Q09878|MET10_SCHPO Probable sulfite reductase [NADPH] fl... 30 1.8
sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8 30 2.3
sp|P21192|ACE2_YEAST Metallothionein expression activator 29 4.0
sp|P10909|CLUS_HUMAN Clusterin precursor (Complement-associ... 28 6.8
sp|P42346|FRAP_RAT FKBP12-rapamycin complex-associated prot... 28 6.8
sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3 28 6.8
sp|P69520|RIR2_HHV23 Ribonucleoside-diphosphate reductase s... 28 8.8
sp|P10224|RIR2_HHV11 Ribonucleoside-diphosphate reductase s... 28 8.8
sp|Q9WY15|SYL_THEMA Leucyl-tRNA synthetase (Leucine--tRNA l... 28 8.8
>sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 869
Score = 32.0 bits (71), Expect = 0.61
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 13 GCPAGFNCGRMQAIELSKWpreSASDIRVETDSLRYYIDQGRLSALC--QQLSWHQWILQ 186
G PA N + + +KW ++ + +R + SL + ID R A C Q W+QW+
Sbjct: 83 GLPAE-NAAIQKGVPPAKWTYDNIAYMRSQLQSLGFAIDWQRELATCDPQYYRWNQWLFL 141
Query: 187 R 189
R
Sbjct: 142 R 142
>sp|Q09878|MET10_SCHPO Probable sulfite reductase [NADPH] flavoprotein component
Length = 1006
Score = 30.4 bits (67), Expect = 1.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 236 LRSNIKRTEYVHAKNWKHFFSSNLLDNLPNKFS 334
L S +R EY++ ++W+ + S+NLL ++ FS
Sbjct: 895 LGSRTQREEYLYGEDWEAYHSANLLTHIGQAFS 927
>sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8
Length = 620
Score = 30.0 bits (66), Expect = 2.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +2
Query: 71 PVSPHPTYVSKQTHYDITLIKAAYLLCANNYPGI-------SGFFRDSD-VTKKTLLKEC 226
P P + + H D+ K A+LL N YP SG F +SD + + LL +
Sbjct: 163 PEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPIKSGVFNESDYASSQQLLADI 222
Query: 227 FRVLRSNI 250
+ + + +I
Sbjct: 223 YEIFKYSI 230
>sp|P21192|ACE2_YEAST Metallothionein expression activator
Length = 770
Score = 29.3 bits (64), Expect = 4.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 153 PTIILASVDSSEILMSPKKLY*RNAFGCYDPTSNELNMFMQKIG 284
PT+I + ++ I SP + Y R + P SN LN+F G
Sbjct: 288 PTLISPRMSNTSINGSPSRKYHRQRYPNKSPESNGLNLFSSNSG 331
>sp|P10909|CLUS_HUMAN Clusterin precursor (Complement-associated protein SP-40,40)
(Complement cytolysis inhibitor) (CLI) (NA1/NA2)
(Apolipoprotein J) (Apo-J) (Testosterone-repressed
prostate message 2) (TRPM-2) [Contains: Clusterin beta
chain (ApoJalpha) (Complement cytolysis inhibitor a
chain); Clusterin alpha chain (ApoJbeta) (Complement
cytolysis inhibitor b chain)]
Length = 449
Score = 28.5 bits (62), Expect = 6.8
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 149 CANNYPGISGFFRDSDVTKKTLLKECFRVLRSNIKRTEYVHAKNWKHFFSSNLLDNLPNK 328
C+ N P + R+ D + L+ R+ R K E + + WK +S+LL+ L +
Sbjct: 313 CSTNNPSQAKLRRELDES----LQVAERLTR---KYNELLKSYQWKMLNTSSLLEQLNEQ 365
Query: 329 FSWI 340
F+W+
Sbjct: 366 FNWV 369
>sp|P42346|FRAP_RAT FKBP12-rapamycin complex-associated protein (FK506-binding protein
12-rapamycin complex-associated protein 1) (Rapamycin
target protein) (RAPT1) (Mammalian target of rapamycin)
(MTOR)
Length = 2549
Score = 28.5 bits (62), Expect = 6.8
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 50 QSNSVNGPVSPHPTYVSKQTHYDITLIKAAYLLCANNYPGISGFFRDSDVTKKTLLKECF 229
+S + + SP P+ + K+ D++ Y + P + GFFR +++ L++
Sbjct: 1850 ESEAESNESSPTPSPLQKKVTEDLSKTLLLYTV-----PAVQGFFRSISLSRGNNLQDTL 1904
Query: 230 RVL 238
RVL
Sbjct: 1905 RVL 1907
>sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3
Length = 410
Score = 28.5 bits (62), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 53 SNSVNGPVSPHPTYVSKQTHY 115
SN +GP PHPTY +H+
Sbjct: 375 SNHHHGPCDPHPTYTDLSSHH 395
>sp|P69520|RIR2_HHV23 Ribonucleoside-diphosphate reductase small chain (Ribonucleotide
reductase small subunit) (Ribonucleotide reductase 38
kDa subunit)
sp|P69521|RIR2_HHV2H Ribonucleoside-diphosphate reductase small chain (Ribonucleotide
reductase small subunit) (Ribonucleotide reductase 38
kDa subunit)
Length = 337
Score = 28.1 bits (61), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 128 IKAAYLLCANNYPGISGFFRDSDVTKKTLLKECFRVLRSNI 250
+ AA L N G+SG F D+ + +EC V+ S +
Sbjct: 87 LSAADDLVTENLGGLSGLFEQKDILHYYVEQECIEVVHSRV 127
>sp|P10224|RIR2_HHV11 Ribonucleoside-diphosphate reductase small chain (Ribonucleotide
reductase small subunit) (Ribonucleotide reductase 38
kDa subunit)
Length = 340
Score = 28.1 bits (61), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 128 IKAAYLLCANNYPGISGFFRDSDVTKKTLLKECFRVLRSNI 250
+ AA L N G+SG F D+ + +EC V+ S +
Sbjct: 90 LSAADDLVTENLGGLSGLFEQKDILHYYVEQECIEVVHSRV 130
>sp|Q9WY15|SYL_THEMA Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 824
Score = 28.1 bits (61), Expect = 8.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 13 GCPAGFNCGRMQAIELSKWpreSASDIRVETDSLRYYIDQGRLSALCQQ--LSWHQWI 180
G PA N + I +W R++ + IR + L D R A C + W QWI
Sbjct: 82 GLPAE-NAAIEKGIHPEEWTRKNIATIRQQVKKLGISYDWSREIATCDEEYYKWTQWI 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,731,524
Number of Sequences: 369166
Number of extensions: 1082926
Number of successful extensions: 3069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)