Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_E15
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15398|DLG7_HUMAN Discs large homolog 7 (Hepatoma up-reg... 37 0.057
sp|P36721|VE1_HPV14 Replication protein E1 33 1.4
sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA l... 32 2.4
sp|P50758|VE1_HPV20 Replication protein E1 32 2.4
sp|O40619|VE1_HPVR7 Replication protein E1 32 2.4
sp|Q02049|VE1_HPV25 Replication protein E1 31 5.3
sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar... 31 5.3
sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 (... 30 9.0
sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8 30 9.0
>sp|Q15398|DLG7_HUMAN Discs large homolog 7 (Hepatoma up-regulated protein) (HURP)
Length = 846
Score = 37.4 bits (85), Expect = 0.057
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = -1
Query: 658 KVFLVTSESLKNPLMPG*LLAQSR*AALINVIS**VCFDTYVGCGLTGPFTEFDCLHSST 479
KV ++SE + PL+ G + A IN D G L T D L SS
Sbjct: 715 KVDCLSSERMSLPLLAGGV------ADDINTNKKEGISDVVEGMELNSSITSQDVLMSSP 768
Query: 478 IKSSRASQNSLLINGPVNVSEQMLFDSKHASTK 380
K++ ASQNS+L G +S+ LFD+K +T+
Sbjct: 769 EKNT-ASQNSILEEGETKISQSELFDNKSLTTE 800
>sp|P36721|VE1_HPV14 Replication protein E1
Length = 605
Score = 32.7 bits (73), Expect = 1.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Frame = -1
Query: 544 DTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK----- 380
DTY+ GL G + DC H + I++ +LL+ +NV ++ + H+ K
Sbjct: 489 DTYLRNGLDGHYVSLDCKHKAPIQTKFP---ALLLTSNINVHNEITYRYLHSRIKGFEFP 545
Query: 379 ----MASDNRFTFE 350
M +DN FE
Sbjct: 546 NPFPMKADNTPEFE 559
>sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 869
Score = 32.0 bits (71), Expect = 2.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 458 GCPAGFNCGRMQAIELSKWpreSASDIRVETDSLRYYIDQGRLSALC--QQLSWHQWILQ 631
G PA N + + +KW ++ + +R + SL + ID R A C Q W+QW+
Sbjct: 83 GLPAE-NAAIQKGVPPAKWTYDNIAYMRSQLQSLGFAIDWQRELATCDPQYYRWNQWLFL 141
Query: 632 R 634
R
Sbjct: 142 R 142
>sp|P50758|VE1_HPV20 Replication protein E1
Length = 605
Score = 32.0 bits (71), Expect = 2.4
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 553 VCFDTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK 380
V DTY+ GL G + DC H + I++ +LL+ +NV ++ + H+ K
Sbjct: 486 VYMDTYLRNGLDGHYVSLDCKHKAPIQTKFP---ALLLTSNINVHNEVNYRYLHSRIK 540
>sp|O40619|VE1_HPVR7 Replication protein E1
Length = 606
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Frame = -1
Query: 544 DTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK----- 380
DTY+ GL G F DC + + +++ LL+ +NV E+ + H+ K
Sbjct: 488 DTYLRNGLDGHFVSLDCKYKAPVQTKFL---PLLLTSNINVHEETNYRYLHSRIKGFEFP 544
Query: 379 ----MASDNRFTFE 350
M SDN FE
Sbjct: 545 NPFPMKSDNTPQFE 558
>sp|Q02049|VE1_HPV25 Replication protein E1
Length = 604
Score = 30.8 bits (68), Expect = 5.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 553 VCFDTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNVSEQMLFDSKHASTK 380
V DTY+ GL G + DC H + +++ +LL+ +NV ++ + H+ K
Sbjct: 485 VYMDTYLRNGLDGHYVSLDCKHKAPMQTKFP---ALLLTSNINVHNEVNYRYLHSRIK 539
>sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner arm I1 complex (1-alpha
DHC) (Dynein 1, subspecies f)
Length = 4625
Score = 30.8 bits (68), Expect = 5.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 HQCLVSEKIDVTSTVNDWVTRCGQ-YISSRNLSRNEVIFEWLN 236
H L+ E D+ ++RCG Y+ SRNL I+ WLN
Sbjct: 2355 HCKLLFEVFDLQYASPATISRCGMVYVDSRNLGYKPYIYTWLN 2397
>sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 (Origin recognition complex
protein 71 kDa subunit)
Length = 620
Score = 30.0 bits (66), Expect = 9.0
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 391 ASTKMASDNRFTFEAE*DARKISRANATNKSLMSIA 284
+ TK AS TFE D RKI R NA ++ MS+A
Sbjct: 231 SETKSASSFLDTFEGYFDQRKIVRTNAKSRHTMSMA 266
>sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8
Length = 620
Score = 30.0 bits (66), Expect = 9.0
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +3
Query: 516 PVSPHPTYVSKQTHYDITLIKAAYLLCANNYPGI-------SGFFRDSD-VTKKTLLKEC 671
P P + + H D+ K A+LL N YP SG F +SD + + LL +
Sbjct: 163 PEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPIKSGVFNESDYASSQQLLADI 222
Query: 672 FRVLRSNI 695
+ + + +I
Sbjct: 223 YEIFKYSI 230
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,676,949
Number of Sequences: 369166
Number of extensions: 2117862
Number of successful extensions: 5713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5712
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)