Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M17
(478 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA l... 32 0.75
sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8 30 2.9
sp|P21192|ACE2_YEAST Metallothionein expression activator 29 4.9
sp|Q09878|MET10_SCHPO Probable sulfite reductase [NADPH] fl... 29 4.9
sp|P50758|VE1_HPV20 Replication protein E1 29 6.4
sp|P12273|PIP_HUMAN Prolactin-inducible protein precursor (... 28 8.3
sp|P42346|FRAP_RAT FKBP12-rapamycin complex-associated prot... 28 8.3
sp|Q7TMF2|THEX1_MOUSE 3' histone mRNA exonuclease 1 (3'-5' ... 28 8.3
sp|Q9CIV4|PEPDA_LACLA Probable dipeptidase A 28 8.3
sp|Q8KA47|SYE_BUCAP Glutamyl-tRNA synthetase (Glutamate--tR... 28 8.3
>sp|Q820M7|SYL_NITEU Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 869
Score = 32.0 bits (71), Expect = 0.75
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 44 GCPAGFNCGRMQAIELSKWpreSASDIRVETDSLRYYIDQGRLSALC--QQLSWHQWILQ 217
G PA N + + +KW ++ + +R + SL + ID R A C Q W+QW+
Sbjct: 83 GLPAE-NAAIQKGVPPAKWTYDNIAYMRSQLQSLGFAIDWQRELATCDPQYYRWNQWLFL 141
Query: 218 R 220
R
Sbjct: 142 R 142
>sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8
Length = 620
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +3
Query: 102 PVSPHPTYVSKQTHYDITLIKAAYLLCANNYPGI-------SGFFRDSD-VTKKTLLKEC 257
P P + + H D+ K A+LL N YP SG F +SD + + LL +
Sbjct: 163 PEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPIKSGVFNESDYASSQQLLADI 222
Query: 258 FRVLRSNI 281
+ + + +I
Sbjct: 223 YEIFKYSI 230
>sp|P21192|ACE2_YEAST Metallothionein expression activator
Length = 770
Score = 29.3 bits (64), Expect = 4.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 184 PTIILASVDSSEILMSPKKLY*RNAFGCYDPTSNKLNMFMQKIG 315
PT+I + ++ I SP + Y R + P SN LN+F G
Sbjct: 288 PTLISPRMSNTSINGSPSRKYHRQRYPNKSPESNGLNLFSSNSG 331
>sp|Q09878|MET10_SCHPO Probable sulfite reductase [NADPH] flavoprotein component
Length = 1006
Score = 29.3 bits (64), Expect = 4.9
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 267 LRSNIKQTEYVHAKNWKHFFSSNLLENLPNNFIWDY---FTIDNVSR--KDAIKERLPPI 431
L S ++ EY++ ++W+ + S+NLL ++ F D I +V R KD +K+ L
Sbjct: 895 LGSRTQREEYLYGEDWEAYHSANLLTHIGQAFSRDQPYKIYIQDVMRSTKDMLKKALMDE 954
Query: 432 CSSF 443
SF
Sbjct: 955 GGSF 958
>sp|P50758|VE1_HPV20 Replication protein E1
Length = 605
Score = 28.9 bits (63), Expect = 6.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 139 VCFDTYVGCGLTGPFTEFDCLHSSTIKSSRASQNSLLINGPVNV 8
V DTY+ GL G + DC H + I++ +LL+ +NV
Sbjct: 486 VYMDTYLRNGLDGHYVSLDCKHKAPIQTKFP---ALLLTSNINV 526
>sp|P12273|PIP_HUMAN Prolactin-inducible protein precursor (Secretory actin-binding
protein) (SABP) (Gross cystic disease fluid protein 15)
(GCDFP-15) (gp17)
Length = 146
Score = 28.5 bits (62), Expect = 8.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 237 KTLLKECFRVLRSNIKQTEYVHAKNWKHFFSSNLLENLPNNFIWDYFT 380
+T LKEC V I A N+K +++ L ++ P F WD++T
Sbjct: 59 QTELKECMVVKTYLISSIPLQGAFNYK--YTACLCDDNPKTFYWDFYT 104
>sp|P42346|FRAP_RAT FKBP12-rapamycin complex-associated protein (FK506-binding protein
12-rapamycin complex-associated protein 1) (Rapamycin
target protein) (RAPT1) (Mammalian target of rapamycin)
(MTOR)
Length = 2549
Score = 28.5 bits (62), Expect = 8.3
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 81 QSNSVNGPVSPHPTYVSKQTHYDITLIKAAYLLCANNYPGISGFFRDSDVTKKTLLKECF 260
+S + + SP P+ + K+ D++ Y + P + GFFR +++ L++
Sbjct: 1850 ESEAESNESSPTPSPLQKKVTEDLSKTLLLYTV-----PAVQGFFRSISLSRGNNLQDTL 1904
Query: 261 RVL 269
RVL
Sbjct: 1905 RVL 1907
>sp|Q7TMF2|THEX1_MOUSE 3' histone mRNA exonuclease 1 (3'-5' exonuclease ERI1) (Eri-1
homolog)
Length = 345
Score = 28.5 bits (62), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 357 CLEGFPASCSRRNASNFLHEHIQF 286
C+ F A+C N + FLHE I+F
Sbjct: 127 CIIDFEATCEEGNPAEFLHEIIEF 150
>sp|Q9CIV4|PEPDA_LACLA Probable dipeptidase A
Length = 459
Score = 28.5 bits (62), Expect = 8.3
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +3
Query: 213 FRDSDVTKKTLLKECFRVLRSNIKQTEYVHAKNWKHFFSSNLLENLPNN-----FIWDYF 377
F SD T LKE + N Y N +H F S+ +++ N ++ +YF
Sbjct: 194 FESSDTIYSTGLKEFIDKNKLNPDFDGY----NLRHIFGSSTIKDTRYNNPRAWYVQNYF 249
Query: 378 TIDNVSRKDAIKERLPPIC 434
+ + D + LP IC
Sbjct: 250 SPETTGNDDPFNQDLPFIC 268
>sp|Q8KA47|SYE_BUCAP Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 474
Score = 28.5 bits (62), Expect = 8.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 291 EYVHAKNWKHFFSSNLLENLPNNFIWDYFTIDNVSRKDAIKERL 422
EY+ +N HF NL +N+ IW T+ ++ + D IK ++
Sbjct: 379 EYLIPEN--HFILKNLYKNIKKISIWSNETLSSLIKNDCIKLKI 420
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,232,079
Number of Sequences: 369166
Number of extensions: 1194231
Number of successful extensions: 3403
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3402
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)