DrC_00763
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00763 (955 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprote... 93 1e-18 sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprote... 93 1e-18 sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprote... 93 1e-18 sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprote... 92 2e-18 sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprote... 92 3e-18 sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprote... 92 3e-18 sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprote... 88 4e-17 sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1) 76 2e-13 sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1) 76 2e-13 sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-... 68 3e-11
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H (hnRNP H) Length = 449 Score = 93.2 bits (230), Expect = 1e-18 Identities = 69/198 (34%), Positives = 95/198 (47%), Gaps = 16/198 (8%) Frame = +3 Query: 339 YIEIYKSSLTEV---------YRAMEKQYEINREEILR--RSRHRQANFPPKFNA---DP 476 YIEI+KSS EV AM++ +R R S R A F Sbjct: 180 YIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGG 239 Query: 477 YSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLG 650 Y + Y Y DGY F ++ ++ + + G + H + F G Sbjct: 240 YGGYDDYNGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS-TFQSTTG 288 Query: 651 PLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEK 830 +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F + DAV AM K Sbjct: 289 HC-VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347 Query: 831 DRCKMSWRYIELFRGSSA 884 D+ M RY+ELF S+A Sbjct: 348 DKANMQHRYVELFLNSTA 365
Score = 66.6 bits (161), Expect = 1e-10
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNES-GILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 177
+RGLP+S + ++ F + I N + GI +GRPSGEA V+L++E + +
Sbjct: 15 VRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKD 74
Query: 178 GKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
+ MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 75 RETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 55.5 bits (132), Expect = 2e-07
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 833
+ +RGLP+ +++++ +FF+ L + I L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 834 RCKMSWRYIELFRGSSA 884
+ ++ RYIE+F+ S A
Sbjct: 173 KERIGHRYIEIFKSSRA 189
Score = 47.8 bits (112), Expect = 5e-05
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 827
+ +RGLP+S + +V FF+ ++ ++ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 828 KDRCKMSWRYIELFRGSS 881
KDR M RY+E+F+ ++
Sbjct: 73 KDRETMGHRYVEVFKSNN 90
Score = 43.9 bits (102), Expect = 7e-04
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 177
LRGLP+ ++ +I+ F +GL I +GI + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 178 GKYMGTRFIEVFPATQKD 231
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 39.3 bits (90), Expect = 0.016
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 181 KYMGTRFIEVF 213
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 30.8 bits (68), Expect = 5.9
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Frame = +1
Query: 151 GLSDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRM---KMSDMTY--------------V 279
G DYNG G F D FG ++ MSD Y V
Sbjct: 239 GYGGYDDYNGYNDGYGF-------GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCV 291
Query: 280 RLRGLPYDVTKEDIFIFFS 336
+RGLPY T+ DI+ FFS
Sbjct: 292 HMRGLPYRATENDIYNFFS 310
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H (hnRNP H) Length = 449 Score = 93.2 bits (230), Expect = 1e-18 Identities = 69/198 (34%), Positives = 95/198 (47%), Gaps = 16/198 (8%) Frame = +3 Query: 339 YIEIYKSSLTEV---------YRAMEKQYEINREEILR--RSRHRQANFPPKFNA---DP 476 YIEI+KSS EV AM++ +R R S R A F Sbjct: 180 YIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGG 239 Query: 477 YSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLG 650 Y + Y Y DGY F ++ ++ + + G + H + F G Sbjct: 240 YGGYDDYNGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS-TFQSTTG 288 Query: 651 PLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEK 830 +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F + DAV AM K Sbjct: 289 HC-VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347 Query: 831 DRCKMSWRYIELFRGSSA 884 D+ M RY+ELF S+A Sbjct: 348 DKANMQHRYVELFLNSTA 365
Score = 66.6 bits (161), Expect = 1e-10
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNES-GILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 177
+RGLP+S + ++ F + I N + GI +GRPSGEA V+L++E + +
Sbjct: 15 VRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKD 74
Query: 178 GKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
+ MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 75 RETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 55.5 bits (132), Expect = 2e-07
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 833
+ +RGLP+ +++++ +FF+ L + I L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 834 RCKMSWRYIELFRGSSA 884
+ ++ RYIE+F+ S A
Sbjct: 173 KERIGHRYIEIFKSSRA 189
Score = 47.8 bits (112), Expect = 5e-05
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 827
+ +RGLP+S + +V FF+ ++ ++ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 828 KDRCKMSWRYIELFRGSS 881
KDR M RY+E+F+ ++
Sbjct: 73 KDRETMGHRYVEVFKSNN 90
Score = 43.9 bits (102), Expect = 7e-04
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 177
LRGLP+ ++ +I+ F +GL I +GI + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 178 GKYMGTRFIEVFPATQKD 231
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 39.3 bits (90), Expect = 0.016
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 181 KYMGTRFIEVF 213
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 30.8 bits (68), Expect = 5.9
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Frame = +1
Query: 151 GLSDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRM---KMSDMTY--------------V 279
G DYNG G F D FG ++ MSD Y V
Sbjct: 239 GYGGYDDYNGYNDGYGF-------GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCV 291
Query: 280 RLRGLPYDVTKEDIFIFFS 336
+RGLPY T+ DI+ FFS
Sbjct: 292 HMRGLPYRATENDIYNFFS 310
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H' (hnRNP H') (FTP-3) Length = 449 Score = 92.8 bits (229), Expect = 1e-18 Identities = 69/198 (34%), Positives = 96/198 (48%), Gaps = 16/198 (8%) Frame = +3 Query: 339 YIEIYKSSLTEV---------YRAMEKQYEINREEILR--RSRHRQANFPPKFNA---DP 476 YIEI+KSS EV AM++ +R R S R A F Sbjct: 180 YIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGG 239 Query: 477 YSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLG 650 Y + Y Y DGY F ++ ++ + + G + H + +F G Sbjct: 240 YGGYDDYGGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS-SFQSTTG 288 Query: 651 PLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEK 830 +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F + DAV AM K Sbjct: 289 HC-VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347 Query: 831 DRCKMSWRYIELFRGSSA 884 D+ M RY+ELF S+A Sbjct: 348 DKANMQHRYVELFLNSTA 365
Score = 69.7 bits (169), Expect = 1e-11
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 177
+RGLP+S + +++ F + I N SGI +GRPSGEA V+L++E + +
Sbjct: 15 VRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKD 74
Query: 178 GKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
+ MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 75 RETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 54.3 bits (129), Expect = 5e-07
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 833
+ +RGLP+ +++++ +FF+ L + + L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 834 RCKMSWRYIELFRGSSA 884
+ ++ RYIE+F+ S A
Sbjct: 173 KERIGHRYIEIFKSSRA 189
Score = 48.1 bits (113), Expect = 4e-05
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 827
+ +RGLP+S + +V FF+ ++ ++ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 828 KDRCKMSWRYIELFRGSS 881
KDR M RY+E+F+ +S
Sbjct: 73 KDRETMGHRYVEVFKSNS 90
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 177
LRGLP+ ++ +I+ F +GL I +G+ + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 178 GKYMGTRFIEVFPATQKD 231
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 38.9 bits (89), Expect = 0.021
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 181 KYMGTRFIEVF 213
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H' (hnRNP H') Length = 449 Score = 92.0 bits (227), Expect = 2e-18 Identities = 41/75 (54%), Positives = 54/75 (72%) Frame = +3 Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRC 839 +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F + DAV AM KD+ Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350 Query: 840 KMSWRYIELFRGSSA 884 M RY+ELF S+A Sbjct: 351 NMQHRYVELFLNSTA 365
Score = 69.3 bits (168), Expect = 1e-11
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 177
+RGLP+S + +++ F + I N SG+ +GRPSGEA V+L++E + +
Sbjct: 15 VRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKD 74
Query: 178 GKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
+ MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 75 RETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 54.3 bits (129), Expect = 5e-07
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 833
+ +RGLP+ +++++ +FF+ L + + L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 834 RCKMSWRYIELFRGSSA 884
+ ++ RYIE+F+ S A
Sbjct: 173 KERIGHRYIEIFKSSRA 189
Score = 49.3 bits (116), Expect = 2e-05
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 827
+ +RGLP+S + ++V FF+ ++ V+ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 828 KDRCKMSWRYIELFRGSS 881
KDR M RY+E+F+ +S
Sbjct: 73 KDRETMGHRYVEVFKSNS 90
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 177
LRGLP+ ++ +I+ F +GL I +G+ + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 178 GKYMGTRFIEVFPATQKD 231
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 38.9 bits (89), Expect = 0.021
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 181 KYMGTRFIEVF 213
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F (hnRNP F) (Nucleolin-like protein mcs94-1) Length = 415 Score = 91.7 bits (226), Expect = 3e-18 Identities = 41/74 (55%), Positives = 53/74 (71%) Frame = +3 Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRC 839 +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F + +AV AM KDR Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350 Query: 840 KMSWRYIELFRGSS 881 M RYIELF S+ Sbjct: 351 NMQHRYIELFLNST 364
Score = 69.7 bits (169), Expect = 1e-11
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 177
LRGLP+S + D+ FL+ I + +G+ +GR SGEA V+L +E + +
Sbjct: 15 LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKD 74
Query: 178 GKYMGTRFIEVFPA--TQKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
+ MG R+IEVF + T+ DW + +D +VRLRGLP+ TKE+I FFS
Sbjct: 75 RESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFS 132
Score = 56.6 bits (135), Expect = 1e-07
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSETDAVKAMEKD 833
+ +RGLP+ T++++ +FF+ L + + + + P+GK TGEA F S+ A KA+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 834 RCKMSWRYIELFRGS 878
+ ++ RYIE+F+ S
Sbjct: 173 KERIGHRYIEVFKSS 187
Score = 49.3 bits (116), Expect = 2e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRV----AEVKIQLGPDGKNTGEAEADFYSETDAVKAME 827
+ +RGLP+S + +DV F + + A V +G+ +GEA + SE D A++
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 828 KDRCKMSWRYIELFR 872
KDR M RYIE+F+
Sbjct: 73 KDRESMGHRYIEVFK 87
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/77 (32%), Positives = 48/77 (62%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
LRGLP+ T+ +I+ F +GL I +GI + ++ +G+ +GEA V+ ++ +
Sbjct: 115 LRGLPFGCTKEEIVQFFSGLEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 181 KYMGTRFIEVFPATQKD 231
+ +G R+IEVF ++Q++
Sbjct: 174 ERIGHRYIEVFKSSQEE 190
Score = 39.7 bits (91), Expect = 0.013
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYKATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 181 KYMGTRFIEVF 213
M R+IE+F
Sbjct: 350 ANMQHRYIELF 360
Score = 30.0 bits (66), Expect = 10.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 277 VRLRGLPYDVTKEDIFIFFS 336
V +RGLPY T+ DI+ FFS
Sbjct: 291 VHMRGLPYKATENDIYNFFS 310
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F (hnRNP F) Length = 415 Score = 91.7 bits (226), Expect = 3e-18 Identities = 41/74 (55%), Positives = 53/74 (71%) Frame = +3 Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRC 839 +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F + +AV AM KDR Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350 Query: 840 KMSWRYIELFRGSS 881 M RYIELF S+ Sbjct: 351 NMQHRYIELFLNST 364
Score = 69.7 bits (169), Expect = 1e-11
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 177
LRGLP+S + D+ FL+ I + +G+ +GR SGEA V+L +E + +
Sbjct: 15 LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKD 74
Query: 178 GKYMGTRFIEVFPA--TQKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
+ MG R+IEVF + T+ DW + +D +VRLRGLP+ TKE+I FFS
Sbjct: 75 RESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFS 132
Score = 56.6 bits (135), Expect = 1e-07
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSETDAVKAMEKD 833
+ +RGLP+ T++++ +FF+ L + + + + P+GK TGEA F S+ A KA+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 834 RCKMSWRYIELFRGS 878
+ ++ RYIE+F+ S
Sbjct: 173 KERIGHRYIEVFKSS 187
Score = 49.3 bits (116), Expect = 2e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRV----AEVKIQLGPDGKNTGEAEADFYSETDAVKAME 827
+ +RGLP+S + +DV F + + A V +G+ +GEA + SE D A++
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 828 KDRCKMSWRYIELFR 872
KDR M RYIE+F+
Sbjct: 73 KDRESMGHRYIEVFK 87
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/77 (32%), Positives = 48/77 (62%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
LRGLP+ T+ +I+ F +GL I +GI + ++ +G+ +GEA V+ ++ +
Sbjct: 115 LRGLPFGCTKEEIVQFFSGLEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 181 KYMGTRFIEVFPATQKD 231
+ +G R+IEVF ++Q++
Sbjct: 174 ERIGHRYIEVFKSSQEE 190
Score = 39.7 bits (91), Expect = 0.013
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYKATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 181 KYMGTRFIEVF 213
M R+IE+F
Sbjct: 350 ANMQHRYIELF 360
Score = 30.0 bits (66), Expect = 10.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 277 VRLRGLPYDVTKEDIFIFFS 336
V +RGLPY T+ DI+ FFS
Sbjct: 291 VHMRGLPYKATENDIYNFFS 310
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9) Length = 346 Score = 87.8 bits (216), Expect = 4e-17 Identities = 57/140 (40%), Positives = 69/140 (49%) Frame = +3 Query: 471 DPYSHVNSYYTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLG 650 D Y N+Y GY N MR R YGG SS F G Sbjct: 151 DDYGGYNNY---GYG---NDGFDDRMRDGRGMGGHG--YGGAGDASSG---------FHG 193 Query: 651 PLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEK 830 +HMRGLP+ ATE D+ FF+PL V I +G DG+ TGEA+ +F + DAV AM K Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 253 Query: 831 DRCKMSWRYIELFRGSSALG 890 D+ M RYIELF S+ G Sbjct: 254 DKNNMQHRYIELFLNSTPGG 273
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +3
Query: 657 SIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEK 830
++ +RGLP+ +++++ +FF L + I L D G++TGEA F S+ A A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 831 DRCKMSWRYIELFRGS 878
+ ++ RYIE+FR S
Sbjct: 77 HKERIGHRYIEIFRSS 92
Score = 45.4 bits (106), Expect = 2e-04
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
LRGLP+ ++ +I+ F GL I +GI +T++ GR +GEA V+ ++ + +
Sbjct: 20 LRGLPFGCSKEEIVQFFQGLEIV-PNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHK 78
Query: 181 KYMGTRFIEVFPATQKD 231
+ +G R+IE+F +++ +
Sbjct: 79 ERIGHRYIEIFRSSRSE 95
Score = 38.1 bits (87), Expect = 0.037
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+RGLP+ ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 199 MRGLPFRATENDIANFFSPL---NPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK 255
Query: 181 KYMGTRFIEVF 213
M R+IE+F
Sbjct: 256 NNMQHRYIELF 266
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1) Length = 479 Score = 75.9 bits (185), Expect = 2e-13 Identities = 39/90 (43%), Positives = 51/90 (56%) Frame = +3 Query: 621 ETQNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYS 800 E +FG +HMRGLP+ A +D+ FFAPL+ + ++ GK TGEA+ F + Sbjct: 389 EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDT 448 Query: 801 ETDAVKAMEKDRCKMSWRYIELFRGSSALG 890 DAV AM KDR + RYIELF S G Sbjct: 449 HEDAVAAMLKDRSHVQHRYIELFLNSCPKG 478
Score = 71.2 bits (173), Expect = 4e-12
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Frame = +1
Query: 4 RGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+GLP+S T D+L F + I N E+GI LN DG+ G+AL+++++E + + +
Sbjct: 154 QGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 213
Query: 181 KYMGTRFIEVFPATQK--DWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
YMG R++EV+ + D + +++K S + VRLRGLPY ++DI FF+
Sbjct: 214 MYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFA 270
Score = 53.9 bits (128), Expect = 6e-07
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 827
I +GLP+S T +DV FF+ R+ + L DGK G+A + SE D KA+E
Sbjct: 151 IRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 210
Query: 828 KDRCKMSWRYIELF 869
K R M RY+E++
Sbjct: 211 KHRMYMGQRYVEVY 224
Score = 52.8 bits (125), Expect = 1e-06
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDG-KNTGEAEADFYSETDAVKAMEKDR 836
+ +RGLPYS EKD+ +FFA L + ++ + G + TGEA F A +A+ K R
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 310
Query: 837 CKMSWRYIELF 869
++ RYIE+F
Sbjct: 311 EEIGNRYIEIF 321
Score = 42.0 bits (97), Expect = 0.003
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDG-RPSGEALVKLDNEIGLSDLRDYN 177
LRGLPYS E DI+ F GL N I ++ G R +GEA V+ + + +
Sbjct: 253 LRGLPYSCNEKDIVDFFAGL---NIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 178 GKYMGTRFIEVFPATQKD 231
+ +G R+IE+FP+ + +
Sbjct: 310 REEIGNRYIEIFPSRRNE 327
Score = 30.0 bits (66), Expect = 10.0
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 166 RDYNGKYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYDVTKEDIFIFFS 336
R Y+ + T ++ P + + ++ ++ D+ +R +GLP+ T ED+ FFS
Sbjct: 114 RGYSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFS 170
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1) Length = 447 Score = 75.9 bits (185), Expect = 2e-13 Identities = 39/90 (43%), Positives = 51/90 (56%) Frame = +3 Query: 621 ETQNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYS 800 E +FG +HMRGLP+ A +D+ FFAPL+ + ++ GK TGEA+ F + Sbjct: 357 EAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFET 416 Query: 801 ETDAVKAMEKDRCKMSWRYIELFRGSSALG 890 DAV AM KDR + RYIELF S G Sbjct: 417 HEDAVAAMLKDRSHVHHRYIELFLNSCPKG 446
Score = 72.0 bits (175), Expect = 2e-12
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Frame = +1
Query: 4 RGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
+GLP+S T D+L F + I N E+GI LN DG+ G+AL+++++E + + +
Sbjct: 122 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 181
Query: 181 KYMGTRFIEVFPATQK--DWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 336
YMG R++EV+ + D + +++K S + VRLRGLPY ++DI FF+
Sbjct: 182 MYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFA 238
Score = 53.9 bits (128), Expect = 6e-07
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 827
I +GLP+S T +DV FF+ R+ + L DGK G+A + SE D KA+E
Sbjct: 119 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 178
Query: 828 KDRCKMSWRYIELF 869
K R M RY+E++
Sbjct: 179 KHRMYMGQRYVEVY 192
Score = 52.8 bits (125), Expect = 1e-06
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 660 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDG-KNTGEAEADFYSETDAVKAMEKDR 836
+ +RGLPYS EKD+ +FFA L + ++ + G + TGEA F A +A+ K R
Sbjct: 219 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 278
Query: 837 CKMSWRYIELF 869
++ RYIE+F
Sbjct: 279 EEIGNRYIEIF 289
Score = 42.0 bits (97), Expect = 0.003
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDG-RPSGEALVKLDNEIGLSDLRDYN 177
LRGLPYS E DI+ F GL N I ++ G R +GEA V+ + + +
Sbjct: 221 LRGLPYSCNEKDIVDFFAGL---NIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 178 GKYMGTRFIEVFPATQKD 231
+ +G R+IE+FP+ + +
Sbjct: 278 REEIGNRYIEIFPSRRNE 295
Score = 32.0 bits (71), Expect = 2.6
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 166 RDYNGKYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYDVTKEDIFIFFS 336
R Y+ + T ++ P + + ++ ++ D+ +R +GLP+ T ED+ FFS
Sbjct: 82 RSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 138
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-binding motif protein 19) Length = 960 Score = 68.2 bits (165), Expect = 3e-11 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 6/129 (4%) Frame = +3 Query: 504 DGYSFPQNKSSQGPMRRSRETKNRSNPYG---GKNSHSSAKVETQNFGEFLGPLSIH--- 665 +G + SS P+ + R+++ G GK A+ ET+ P + H Sbjct: 238 EGSEAEEEDSSATPVLQERDSRGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVK 297 Query: 666 MRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRCKM 845 +RG P++ TEK+V EF APL+ ++I G TG DF +E + +A++ +R M Sbjct: 298 LRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYM 357 Query: 846 SWRYIELFR 872 RYIE+FR Sbjct: 358 GGRYIEVFR 366
Score = 52.4 bits (124), Expect = 2e-06
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Frame = +1
Query: 1 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 180
LRG P++ TE +++ FL L I I N G +G V NE + N
Sbjct: 298 LRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 181 KYMGTRFIEVF-----PATQ-------KDWFG-----EEMRMKMSDMTYVRLRGLPYDVT 309
+YMG R+IEVF P T+ K W G E +++ + +R LPY T
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 310 KEDIFIFFS 336
+ED+ FS
Sbjct: 415 EEDLEKLFS 423
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,200,256
Number of Sequences: 369166
Number of extensions: 2361411
Number of successful extensions: 5642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5593
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
