Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_N13
(756 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprote... 144 2e-34
sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprote... 144 3e-34
sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprote... 142 7e-34
sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprote... 142 7e-34
sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprote... 141 2e-33
sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprote... 140 4e-33
sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprote... 135 2e-31
sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1) 112 1e-24
sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1) 109 9e-24
sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 (RNA-binding m... 70 5e-12
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
Length = 415
Score = 144 bits (364), Expect = 2e-34
Identities = 98/261 (37%), Positives = 136/261 (52%), Gaps = 16/261 (6%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+VRLRGLP+ TKE+I FFS L I +G+ L P+ TGEAFVQF ++E A AL +
Sbjct: 112 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 171
Query: 194 HNQCIRSRYIEIYKSSLTEV---------YRAMEKQYEINREEILRR--SRHRQANFP-- 334
H + I RYIE++KSS EV + ++++ +R RR +QA
Sbjct: 172 HKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERM 231
Query: 335 -PKFNADPYSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVET 505
P + Y Y +DGY F + + + S Y + S V++
Sbjct: 232 RPSAYSTGYGGYEEYSGLSDGYGFTTDLFGRDL------SYCLSGMYDHRYGDSEFTVQS 285
Query: 506 QNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSET 685
+HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F +
Sbjct: 286 TTGH------CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 339
Query: 686 DAVKAMEKDRCKMSWRYIELF 748
+AV AM KDR M RYIELF
Sbjct: 340 EAVAAMSKDRANMQHRYIELF 360
Score = 59.7 bits (143), Expect = 8e-09
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V +RGLPY T+ DI+ FFS L R V + GPD TGEA V+F T E+A A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 197 NQCIRSRYIEIYKSSLT 247
++ RYIE++ +S T
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 55.8 bits (133), Expect = 1e-07
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMI--SRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQ 190
V+LRGLP+ + ED+ F S I GV +Y + +GEAFV+ + +D +AL+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 191 RHNQCIRSRYIEIYKSSLTEV 253
+ + + RYIE++KS TE+
Sbjct: 73 KDRESMGHRYIEVFKSHRTEM 93
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSETDAVKAMEKD 712
+ +RGLP+ T++++ +FF+ L + + + + P+GK TGEA F S+ A KA+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 713 RCKMSWRYIELFR 751
+ ++ RYIE+F+
Sbjct: 173 KERIGHRYIEVFK 185
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRV----AEVKIQLGPDGKNTGEAEADFYSETDAVKAME 706
+ +RGLP+S + +DV F + + A V +G+ +GEA + SE D A++
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 707 KDRCKMSWRYIELFR 751
KDR M RYIE+F+
Sbjct: 73 KDRESMGHRYIEVFK 87
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F (hnRNP F) (Nucleolin-like
protein mcs94-1)
Length = 415
Score = 144 bits (362), Expect = 3e-34
Identities = 98/261 (37%), Positives = 136/261 (52%), Gaps = 16/261 (6%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+VRLRGLP+ TKE+I FFS L I +G+ L P+ TGEAFVQF ++E A AL +
Sbjct: 112 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 171
Query: 194 HNQCIRSRYIEIYKSSLTEV---------YRAMEKQYEINREEILRR--SRHRQANFP-- 334
H + I RYIE++KSS EV + ++++ +R RR +QA
Sbjct: 172 HKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERM 231
Query: 335 -PKFNADPYSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVET 505
P + Y Y +DGY F + + + S Y + S V++
Sbjct: 232 RPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDL------SYCLSGMYDHRYGDSEFTVQS 285
Query: 506 QNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSET 685
+HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F +
Sbjct: 286 TTGH------CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 339
Query: 686 DAVKAMEKDRCKMSWRYIELF 748
+AV AM KDR M RYIELF
Sbjct: 340 EAVAAMSKDRANMQHRYIELF 360
Score = 59.7 bits (143), Expect = 8e-09
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V +RGLPY T+ DI+ FFS L R V + GPD TGEA V+F T E+A A+ +
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 197 NQCIRSRYIEIYKSSLT 247
++ RYIE++ +S T
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 55.8 bits (133), Expect = 1e-07
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMI--SRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQ 190
V+LRGLP+ + ED+ F S I GV +Y + +GEAFV+ + +D +AL+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 191 RHNQCIRSRYIEIYKSSLTEV 253
+ + + RYIE++KS TE+
Sbjct: 73 KDRESMGHRYIEVFKSHRTEM 93
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSETDAVKAMEKD 712
+ +RGLP+ T++++ +FF+ L + + + + P+GK TGEA F S+ A KA+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 713 RCKMSWRYIELFR 751
+ ++ RYIE+F+
Sbjct: 173 KERIGHRYIEVFK 185
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRV----AEVKIQLGPDGKNTGEAEADFYSETDAVKAME 706
+ +RGLP+S + +DV F + + A V +G+ +GEA + SE D A++
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 707 KDRCKMSWRYIELFR 751
KDR M RYIE+F+
Sbjct: 73 KDRESMGHRYIEVFK 87
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
Length = 449
Score = 142 bits (359), Expect = 7e-34
Identities = 99/261 (37%), Positives = 135/261 (51%), Gaps = 16/261 (6%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+VRLRGLP+ +KE+I FFS L I +G+ L TGEAFVQF ++E A AL++
Sbjct: 112 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 194 HNQCIRSRYIEIYKSSLTEV---------YRAMEKQYEINREEILR--RSRHRQANFPPK 340
H + I RYIEI+KSS EV AM++ +R R S R A F
Sbjct: 172 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERM 231
Query: 341 FNA---DPYSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVET 505
Y + Y Y DGY F ++ ++ + + G + H +
Sbjct: 232 RRGAYGGGYGGYDDYNGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS 281
Query: 506 QNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSET 685
F G +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F +
Sbjct: 282 -TFQSTTGHC-VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 339
Query: 686 DAVKAMEKDRCKMSWRYIELF 748
DAV AM KD+ M RY+ELF
Sbjct: 340 DAVAAMSKDKANMQHRYVELF 360
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V +RGLPY T+ DI+ FFS L R V + GPD TGEA V+F T EDA A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 197 NQCIRSRYIEIYKSS 241
++ RY+E++ +S
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 56.2 bits (134), Expect = 9e-08
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISR--DGVGLLYGPDDVPTGEAFVQFMTREDANLALQ 190
V++RGLP+ + +++ FFS I G+ +Y + P+GEAFV+ + ++ LAL+
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 191 RHNQCIRSRYIEIYKSSLTEV 253
+ + + RY+E++KS+ E+
Sbjct: 73 KDRETMGHRYVEVFKSNNVEM 93
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 712
+ +RGLP+ +++++ +FF+ L + I L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 713 RCKMSWRYIELFR 751
+ ++ RYIE+F+
Sbjct: 173 KERIGHRYIEIFK 185
Score = 47.0 bits (110), Expect = 6e-05
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 706
+ +RGLP+S + +V FF+ ++ ++ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 707 KDRCKMSWRYIELFR 751
KDR M RY+E+F+
Sbjct: 73 KDRETMGHRYVEVFK 87
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
Length = 449
Score = 142 bits (359), Expect = 7e-34
Identities = 99/261 (37%), Positives = 135/261 (51%), Gaps = 16/261 (6%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+VRLRGLP+ +KE+I FFS L I +G+ L TGEAFVQF ++E A AL++
Sbjct: 112 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 194 HNQCIRSRYIEIYKSSLTEV---------YRAMEKQYEINREEILR--RSRHRQANFPPK 340
H + I RYIEI+KSS EV AM++ +R R S R A F
Sbjct: 172 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERM 231
Query: 341 FNA---DPYSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVET 505
Y + Y Y DGY F ++ ++ + + G + H +
Sbjct: 232 RRGAYGGGYGGYDDYNGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS 281
Query: 506 QNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSET 685
F G +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F +
Sbjct: 282 -TFQSTTGHC-VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 339
Query: 686 DAVKAMEKDRCKMSWRYIELF 748
DAV AM KD+ M RY+ELF
Sbjct: 340 DAVAAMSKDKANMQHRYVELF 360
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V +RGLPY T+ DI+ FFS L R V + GPD TGEA V+F T EDA A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 197 NQCIRSRYIEIYKSS 241
++ RY+E++ +S
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 56.2 bits (134), Expect = 9e-08
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISR--DGVGLLYGPDDVPTGEAFVQFMTREDANLALQ 190
V++RGLP+ + +++ FFS I G+ +Y + P+GEAFV+ + ++ LAL+
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 191 RHNQCIRSRYIEIYKSSLTEV 253
+ + + RY+E++KS+ E+
Sbjct: 73 KDRETMGHRYVEVFKSNNVEM 93
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 712
+ +RGLP+ +++++ +FF+ L + I L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 713 RCKMSWRYIELFR 751
+ ++ RYIE+F+
Sbjct: 173 KERIGHRYIEIFK 185
Score = 47.0 bits (110), Expect = 6e-05
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 706
+ +RGLP+S + +V FF+ ++ ++ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 707 KDRCKMSWRYIELFR 751
KDR M RY+E+F+
Sbjct: 73 KDRETMGHRYVEVFK 87
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H' (hnRNP H') (FTP-3)
Length = 449
Score = 141 bits (356), Expect = 2e-33
Identities = 99/261 (37%), Positives = 136/261 (52%), Gaps = 16/261 (6%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+VRLRGLP+ +KE+I FFS L I +G+ L TGEAFVQF ++E A AL++
Sbjct: 112 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 194 HNQCIRSRYIEIYKSSLTEV---------YRAMEKQYEINREEILR--RSRHRQANFPPK 340
H + I RYIEI+KSS EV AM++ +R R S R A F
Sbjct: 172 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERM 231
Query: 341 FNA---DPYSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVET 505
Y + Y Y DGY F ++ ++ + + G + H +
Sbjct: 232 RRGAYGGGYGGYDDYGGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS 281
Query: 506 QNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSET 685
+F G +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F +
Sbjct: 282 -SFQSTTGHC-VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHE 339
Query: 686 DAVKAMEKDRCKMSWRYIELF 748
DAV AM KD+ M RY+ELF
Sbjct: 340 DAVAAMAKDKANMQHRYVELF 360
Score = 58.9 bits (141), Expect = 1e-08
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISR--DGVGLLYGPDDVPTGEAFVQFMTREDANLALQ 190
V++RGLP+ + +++ FFS I G+ +Y + P+GEAFV+ + E+ LAL+
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 191 RHNQCIRSRYIEIYKSSLTEV 253
+ + + RY+E++KS+ E+
Sbjct: 73 KDRETMGHRYVEVFKSNSVEM 93
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V +RGLPY T+ DI+ FFS L R V + GPD TGEA V+F T EDA A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 197 NQCIRSRYIEIYKSS 241
++ RY+E++ +S
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 712
+ +RGLP+ +++++ +FF+ L + + L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 713 RCKMSWRYIELFR 751
+ ++ RYIE+F+
Sbjct: 173 KERIGHRYIEIFK 185
Score = 46.2 bits (108), Expect = 9e-05
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 706
+ +RGLP+S + +V FF+ ++ ++ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 707 KDRCKMSWRYIELFR 751
KDR M RY+E+F+
Sbjct: 73 KDRETMGHRYVEVFK 87
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')
Length = 449
Score = 140 bits (353), Expect = 4e-33
Identities = 99/261 (37%), Positives = 134/261 (51%), Gaps = 16/261 (6%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+VRLRGLP+ +KE+I FFS L I +G+ L TGEAFVQF ++E A AL++
Sbjct: 112 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Query: 194 HNQCIRSRYIEIYKSSLTEV---YRAMEKQYEINREEILRR--------SRHRQANFPPK 340
H + I RYIEI+KSS EV Y K + R R S R A F
Sbjct: 172 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERM 231
Query: 341 FNA---DPYSHVNSY--YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVET 505
Y + Y Y DGY F ++ ++ + + G + H +
Sbjct: 232 RRGAYGGGYGGYDDYGGYNDGYGFGSDRFG----------RDLNYCFSGMSDHRYGDGGS 281
Query: 506 QNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSET 685
+F G +HMRGLPY ATE D++ FF+PL V I++GPDG+ TGEA+ +F +
Sbjct: 282 -SFQSTTGHC-VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHE 339
Query: 686 DAVKAMEKDRCKMSWRYIELF 748
DAV AM KD+ M RY+ELF
Sbjct: 340 DAVAAMAKDKANMQHRYVELF 360
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISR--DGVGLLYGPDDVPTGEAFVQFMTREDANLALQ 190
V++RGLP+ + E++ FFS I GV +Y + P+GEAFV+ + ++ LAL+
Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 191 RHNQCIRSRYIEIYKSSLTEV 253
+ + + RY+E++KS+ E+
Sbjct: 73 KDRETMGHRYVEVFKSNSVEM 93
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V +RGLPY T+ DI+ FFS L R V + GPD TGEA V+F T EDA A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 197 NQCIRSRYIEIYKSS 241
++ RY+E++ +S
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEKD 712
+ +RGLP+ +++++ +FF+ L + + L D G++TGEA F S+ A KA++K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 713 RCKMSWRYIELFR 751
+ ++ RYIE+F+
Sbjct: 173 KERIGHRYIEIFK 185
Score = 47.4 bits (111), Expect = 4e-05
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 706
+ +RGLP+S + ++V FF+ ++ V+ +G+ +GEA + SE + A++
Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 707 KDRCKMSWRYIELFR 751
KDR M RY+E+F+
Sbjct: 73 KDRETMGHRYVEVFK 87
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9)
Length = 346
Score = 135 bits (339), Expect = 2e-31
Identities = 97/266 (36%), Positives = 125/266 (46%), Gaps = 22/266 (8%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
VRLRGLP+ +KE+I FF L I +G+ L TGEAFVQF ++E A AL +H
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 197 NQCIRSRYIEIYKSSLTEVYRAMEKQ---------------------YEINREEILRRSR 313
+ I RYIEI++SS +E+ + Y R + R R
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMR 137
Query: 314 HRQANFPPKFNA-DPYSHVNSYYTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSS 490
+ + D Y N+Y GY N MR R YGG SS
Sbjct: 138 RGGDGYDGGYGGFDDYGGYNNY---GYG---NDGFDDRMRDGRGMGGHG--YGGAGDASS 189
Query: 491 AKVETQNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEAD 670
F G +HMRGLP+ ATE D+ FF+PL V I +G DG+ TGEA+ +
Sbjct: 190 G---------FHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE 240
Query: 671 FYSETDAVKAMEKDRCKMSWRYIELF 748
F + DAV AM KD+ M RYIELF
Sbjct: 241 FVTHEDAVAAMSKDKNNMQHRYIELF 266
Score = 55.1 bits (131), Expect = 2e-07
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+V +RGLP+ T+ DI FFS L R + + G D TGEA V+F+T EDA A+ +
Sbjct: 196 FVHMRGLPFRATENDIANFFSPLNPIRVHIDI--GADGRATGEADVEFVTHEDAVAAMSK 253
Query: 194 HNQCIRSRYIEIYKSS 241
++ RYIE++ +S
Sbjct: 254 DKNNMQHRYIELFLNS 269
Score = 50.1 bits (118), Expect = 7e-06
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 536 SIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPD--GKNTGEAEADFYSETDAVKAMEK 709
++ +RGLP+ +++++ +FF L + I L D G++TGEA F S+ A A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 710 DRCKMSWRYIELFR 751
+ ++ RYIE+FR
Sbjct: 77 HKERIGHRYIEIFR 90
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1)
Length = 479
Score = 112 bits (279), Expect = 1e-24
Identities = 85/250 (34%), Positives = 116/250 (46%), Gaps = 6/250 (2%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
VRLRGLPY ++DI FF+ L I D ++ TGEA+VQF E AN AL +H
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIV-DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 197 NQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPP-KFNADPY----- 358
+ I +RYIEI+ S EV R + + + PP K+ +P
Sbjct: 310 REEIGNRYIEIFPSRRNEV-----------RTHVGSHKGKKMTSSPPTKYITEPEVVFEE 358
Query: 359 SHVNSYYTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLGPLS 538
VN +F +K + P S + E +FG
Sbjct: 359 HEVNEDIRPMTAFESDKEIELPKEMSEKLP-----------------EAVDFGTLPSLHF 401
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRC 718
+HMRGLP+ A +D+ FFAPL+ + ++ GK TGEA+ F + DAV AM KDR
Sbjct: 402 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 461
Query: 719 KMSWRYIELF 748
+ RYIELF
Sbjct: 462 HVQHRYIELF 471
Score = 57.8 bits (138), Expect = 3e-08
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 5 DMTYVRLRGLPYDVTKEDIFIFFS--RLMISRDGVGLLYGPDDVPTGEAFVQFMTREDAN 178
D+ +R +GLP+ T ED+ FFS R+ S +G+ L D G+A ++ + +D
Sbjct: 147 DVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQ 206
Query: 179 LALQRHNQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPPKFN 346
AL++H + RY+E+Y+ + +V A+ K ++ +L R P N
Sbjct: 207 KALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKPSPVLSDGVVRLRGLPYSCN 261
Score = 53.9 bits (128), Expect = 5e-07
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 706
I +GLP+S T +DV FF+ R+ + L DGK G+A + SE D KA+E
Sbjct: 151 IRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 210
Query: 707 KDRCKMSWRYIELF 748
K R M RY+E++
Sbjct: 211 KHRMYMGQRYVEVY 224
Score = 50.4 bits (119), Expect = 5e-06
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +2
Query: 14 YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQR 193
+V +RGLP+ +DI FF+ L R + + Y TGEA V F T EDA A+ +
Sbjct: 401 FVHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSSGKATGEADVHFDTHEDAVAAMLK 458
Query: 194 HNQCIRSRYIEIYKSS 241
++ RYIE++ +S
Sbjct: 459 DRSHVQHRYIELFLNS 474
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1)
Length = 447
Score = 109 bits (272), Expect = 9e-24
Identities = 86/245 (35%), Positives = 115/245 (46%), Gaps = 1/245 (0%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
VRLRGLPY ++DI FF+ L I D ++ TGEA+VQF E AN AL +H
Sbjct: 219 VRLRGLPYSCNEKDIVDFFAGLNIV-DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 197 NQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPP-KFNADPYSHVNS 373
+ I +RYIEI+ S EV R + + A+FP K+ +P
Sbjct: 278 REEIGNRYIEIFPSRRNEV-----------RTHVGSYKGKKIASFPTAKYITEPEMVFEE 326
Query: 374 YYTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLGPLSIHMRG 553
+ N+ Q PM K P E +FG +HMRG
Sbjct: 327 HEV-------NEDIQ-PMTAFESEKEIELP----KEVPEKLPEAADFGTTSSLHFVHMRG 374
Query: 554 LPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRCKMSWR 733
LP+ A +D+ FFAPL+ + ++ GK TGEA+ F + DAV AM KDR + R
Sbjct: 375 LPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHR 434
Query: 734 YIELF 748
YIELF
Sbjct: 435 YIELF 439
Score = 56.2 bits (134), Expect = 9e-08
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Frame = +2
Query: 5 DMTYVRLRGLPYDVTKEDIFIFFS--RLMISRDGVGLLYGPDDVPTGEAFVQFMTREDAN 178
D+ +R +GLP+ T ED+ FFS R+ +G+ L D G+A ++ + +D
Sbjct: 115 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 174
Query: 179 LALQRHNQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPPKFN 346
AL++H + RY+E+Y+ + +V A+ K ++ ++ R P N
Sbjct: 175 KALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKSSPVVNDGVVRLRGLPYSCN 229
Score = 53.9 bits (128), Expect = 5e-07
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 539 IHMRGLPYSATEKDVHEFFAPLRVAE----VKIQLGPDGKNTGEAEADFYSETDAVKAME 706
I +GLP+S T +DV FF+ R+ + L DGK G+A + SE D KA+E
Sbjct: 119 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 178
Query: 707 KDRCKMSWRYIELF 748
K R M RY+E++
Sbjct: 179 KHRMYMGQRYVEVY 192
Score = 52.0 bits (123), Expect = 2e-06
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +2
Query: 2 SDMTYVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANL 181
S + +V +RGLP+ +DI FF+ L R + + Y TGEA V F T EDA
Sbjct: 365 SSLHFVHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVA 422
Query: 182 ALQRHNQCIRSRYIEIYKSS 241
A+ + + RYIE++ +S
Sbjct: 423 AMLKDRSHVHHRYIELFLNS 442
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 (RNA-binding motif protein 12) (SH3/WW
domain anchor protein in the nucleus) (SWAN)
Length = 932
Score = 70.5 bits (171), Expect = 5e-12
Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 3/250 (1%)
Frame = +2
Query: 5 DMTYVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLA 184
D YV + G+P+ + D+ FF L + D V LL G V+F++ +D A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 185 LQRHNQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPPKFNADPYSH 364
L+R+ + RY+E+ A E+Q+ I
Sbjct: 360 LKRNRMLMIQRYVEVSP--------ATERQWVAAGGHI---------------------- 389
Query: 365 VNSYYTDGYSFPQNKSSQGPMRRSRETKNRS-NPYGGKNSHSSAKVETQNFGEFLGPLSI 541
+F QN G +T RS +P G K S S + E +
Sbjct: 390 ---------TFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAG--------FCV 432
Query: 542 HMRGLPYSATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSETDAVKAMEKDR 715
+++GLP+ A K V +FF L + E + I GP+GK TGE +F +E D A+ + +
Sbjct: 433 YLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHK 492
Query: 716 CKMSWRYIEL 745
M R+I++
Sbjct: 493 QYMGNRFIQV 502
Score = 70.1 bits (170), Expect = 6e-12
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 2/241 (0%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
V L+GLP++ + + FF +L I D + + YGP+ TGE FV+F D AL RH
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 197 NQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPPKFNADPYSHVNSY 376
Q + +R+I+++ + K+ + + +++R+ R NF
Sbjct: 492 KQYMGNRFIQVH---------PITKKGMLEKIDMIRK---RLQNF--------------- 524
Query: 377 YTDGYSFPQNKSSQGPMRRSRETKNRSNPYGGKNSHSSAKVETQNFGEFLGPLSIHMRGL 556
S+ Q + NP G N SAKV H+ +
Sbjct: 525 -----SYDQREMI-------------LNPEGDVN---SAKV------------CAHITNI 551
Query: 557 PYSATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSETDAVKAMEKDRCKMSW 730
P+S T+ DV +F + V E V + + +G+ G+A F +E DA K+ R K++
Sbjct: 552 PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNG 611
Query: 731 R 733
R
Sbjct: 612 R 612
Score = 52.8 bits (125), Expect = 1e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Frame = +2
Query: 476 NSHSSAKVETQNFGEFLGPLSIHMRGLPYSATEKDVHEFFAPLRVAEVKIQLGPDGKNTG 655
NS SS K N + L + + G+P+SA E DV +FF LRV V + G+N G
Sbjct: 289 NSQSSVKPLPINPDD----LYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNG 344
Query: 656 EAEADFYSETDAVKAMEKDRCKMSWRYIEL 745
F S D +A++++R M RY+E+
Sbjct: 345 NGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 50.1 bits (118), Expect = 7e-06
Identities = 38/107 (35%), Positives = 51/107 (47%)
Frame = +2
Query: 17 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 196
+RL+GLP DI FFS L I GV ++ G GEAF+ F T EDA L + R
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE----LGEAFIVFATDEDARLGMMRT 60
Query: 197 NQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRQANFPP 337
I+ + + SS TE M+ E++R RR + PP
Sbjct: 61 GGTIKGSKVTLLLSSKTE----MQNMIELSR----RRFETANLDIPP 99
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 11 TYVRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLA-L 187
T ++++ +P+ V+ ++I FF + V L Y +PTGEA V F +R++A A +
Sbjct: 856 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 915
Query: 188 QRHNQCIRSRYIEI 229
+++ I SR +++
Sbjct: 916 DLNDRPIGSRKVKL 929
Score = 38.1 bits (87), Expect = 0.026
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +2
Query: 23 LRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQ 202
+ +P+ +TK D+ F + + + V +L + G+A VQF +DA + + H +
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRK 607
Query: 203 CIRSRYIEIYKSSLTEVYRAMEK 271
+ R ++ +L ++ R +EK
Sbjct: 608 KLNGREAFVHVVTLEDM-REIEK 629
Score = 29.6 bits (65), Expect = 9.2
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 527 GPLSIHMRGLPYSATEKDVHEFFAPLRV--AEVKIQLGPDGKNTGEAEADFYSETDAVKA 700
GP I ++ +P++ + ++ +FF +V V ++ G TGEA F S +A A
Sbjct: 854 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 913
Query: 701 M 703
+
Sbjct: 914 V 914
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,346,832
Number of Sequences: 369166
Number of extensions: 1950534
Number of successful extensions: 4952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4905
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)